| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_0579 |
|---|
| Symbol | |
|---|
| ID | 5732300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | - |
|---|
| Start bp | 665931 |
|---|
| End bp | 667817 |
|---|
| Gene Length | 1887 bp |
|---|
| Protein Length | 628 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641277706 |
|---|
| Product | CRISPR-associated RAMP Crm2 family protein |
|---|
| Protein accession | YP_001543355 |
|---|
| Protein GI | 159897108 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1353] Predicted hydrolase of the HD superfamily (permuted catalytic motifs) |
|---|
| TIGRFAM ID | [TIGR02577] CRISPR-associated protein, Crm2 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.638626 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGAT CGCTGTTGTT GATCGCCCTA GGGCCAGTTC AGGAATTTAT CGAGCAGGCT
CGGCGCACCC GCGATGTCTG GTTTGGTTCG TGGGTGCTCA GTCATCTTGC CAAAAAGGTC
GCCCAAACCC TGCCACGCGA AGGCTTGATC TTTCCAACTG GCGATAGTTT GCCCTCGCCC
GAAGCCGAAA ATAGCGATCC AAGTACTGAA CGAATCAGCT ATAGTAACCA AATTTTGGTG
ATCGTGCCCG ATGCCCAAGC AGCCATTACC CACGCAAAGG CAGCCTTTGA TCAAGAAATT
GACCAATTCG TAAACATTCT GCTGAAAACT AAACAGATCA ATTGGCTCGA AGGCCTGTCG
GAAGAGCAGC GTGAACAGCA GCTTATTAAA CAATTAAAAG ATTTATTTGA GTTTCAGTAT
GTATATGTTG ATTTACCGGA TGACCAGCAC TATGCGCAAC AACGCAAAAA GCTTTACCAG
CTCTATGCAG CACGTAAAAA TACCCGCAAC TTTGGCTTAA TTGATTGGCA ACAAGACCCC
CAAAATATGA AGCGCTCGGA TAAATCGTCG CTCGATGGCT GGCACACGCT AATAGCCAAT
GGAGCAAAAT CGGGCGAAAA TCTCTCAGCC GTCGATTTAC TCAAGCGTAT GCTCAAACCA
CAAGATTTAG ACCAAGCCTA TCCAAAAGGT TTAGACGGAT TCCCAAGTAC TTCGCATATG
GCTGCGCTGG CATTTGCTGA ACATGTTAAT CAAAGCACTT TAGCTCGCCA AGGTTGGGAA
CGCTATATCA ATAATCTACG TAGCACAGGC TATCGCATCA CTGAATATTT ACCACGAGTT
CAGCGCTTTG ATCGAATTGC CCTCTTTCCA AGCGAAAATA CTAACCGCGA TTTTTTTGAT
GGTTCATTGG TTTTTGAGTC GCGCTTAGGG GAAGATTTCG CCAATACTGA TTTGAATACT
GTAATTATTA AGCAAGCACG CGGCTATTTG GAAGATTTTA TAACTGCTTA TGCCAAACAA
CGCCCAAATC CCTATTATGC GATTATTGCT GCCGATGGCG ATAAAATGGG CAATTTAATT
GATTCGATTA GCGATGTACA AATTCATCGC GATTTATCCA AGGTTGTTAC AACATTTGCT
AAAGATGCAG CTCAAATTCT AGAAAATGAT TACCAAGCAG CAGTCATTTA TGCTGGTGGC
GATGATGTAC TAGCGCTTCT TCCATTACAT ACACTTTTAG CAGCTACCAA AAAAATCAGC
GATCTCTTTA TCGAATATAT GCAACCACTA GCCGAGCAAC AGGCTGTTAG CACACCAACA
CTCTCGGTTG GGGTGGCAAT TGTGCATCAT CTTGAAGCCT TGCAGGATTC AATTCAATTG
GCGCGGAAGG CCGAGAAGCT AGCCAAAAAG CCGCGTAATG CCTTAGCAAT TATTTTGAGC
AAACGTAATG GCTCCGATAA AACCATTGTT GGTCAGTGGG ATACAGAATT TTATCAACAC
TTAACCAAAT TAGTTGAGCT GCATTGCCAA CAAACAATTC CTGATGGCTT TATTTTTGAG
CTTGATGAGC TACTCAAGCG CTTTGACTTT GGGCTTATCA ATGATCGAAC AGAACTTCAA
CAAACGCTCA AGATTATTGA ACATGAAACG CTGCGAATTT TGAAGCGCAA ACAAATTCAG
TCTGCAGGCG AAGCTACATT TTTGGCTGCT GATGTGATTA ATCTGCTCCA AAACATTATT
GGCTATTGTT CGAGTCATTC ATCAAACTCA GATCAAGCAG ACCAATATCT GCGCGATTTT
ATCGCCATGA ATTTAGTGGC ACGGGAGTTA GCCAATGTTC AGGCCTTATT TGAAAAGACT
CAGCCCCAAG GAGTACCTCA ATTATGA
|
|---|
| Protein sequence | MNRSLLLIAL GPVQEFIEQA RRTRDVWFGS WVLSHLAKKV AQTLPREGLI FPTGDSLPSP
EAENSDPSTE RISYSNQILV IVPDAQAAIT HAKAAFDQEI DQFVNILLKT KQINWLEGLS
EEQREQQLIK QLKDLFEFQY VYVDLPDDQH YAQQRKKLYQ LYAARKNTRN FGLIDWQQDP
QNMKRSDKSS LDGWHTLIAN GAKSGENLSA VDLLKRMLKP QDLDQAYPKG LDGFPSTSHM
AALAFAEHVN QSTLARQGWE RYINNLRSTG YRITEYLPRV QRFDRIALFP SENTNRDFFD
GSLVFESRLG EDFANTDLNT VIIKQARGYL EDFITAYAKQ RPNPYYAIIA ADGDKMGNLI
DSISDVQIHR DLSKVVTTFA KDAAQILEND YQAAVIYAGG DDVLALLPLH TLLAATKKIS
DLFIEYMQPL AEQQAVSTPT LSVGVAIVHH LEALQDSIQL ARKAEKLAKK PRNALAIILS
KRNGSDKTIV GQWDTEFYQH LTKLVELHCQ QTIPDGFIFE LDELLKRFDF GLINDRTELQ
QTLKIIEHET LRILKRKQIQ SAGEATFLAA DVINLLQNII GYCSSHSSNS DQADQYLRDF
IAMNLVAREL ANVQALFEKT QPQGVPQL
|
|---|
| |