Gene Haur_0476 details

Gene Information

• Locus tag: Haur_0476
• Symbol: infB
• ID: 5732375
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Herpetosiphon aurantiacus ATCC 23779
• Kingdom: Bacteria
• Replicon accession: NC_009972
• Strand: +
• Start bp: 554627
• End bp: 556435
• Gene Length: 1809 bp
• Protein Length: 602 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 641277602
• Product: translation initiation factor IF-2
• Protein accession: YP_001543255
• Protein GI: 159897008
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0532] Translation initiation factor 2 (IF-2; GTPase)
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR00487] translation initiation factor IF-2

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.0258534
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTCGCC CAGTTGCTCC CGCCCGCCCA CGTGGCCCAG TTGAGCTTGG GCCGGTCATG 
ACGGTGCGTG AGTTATCCGA AGCACTCAGT GTTGGCGCAG CCGATATTAT CAAAGAAATG 
CTCAAGCAAG GCATTTTGGC GAATATTAAT CAGCAGCTTG ATTATGAAAC TGCCGCCGTG 
ATTGCCGCCG AGTTTGATAT CGAAACCTCT GAGCATGTGC CAGAACGGAT GGCTGGCTTG 
GTTGATGATA TTGGCGATGC GTTGCGGGCT GAAACAGCTG AAAATCTCAA AACCCGCCCA 
CCAGTCGTCA CGATCATGGG TCACGTTGAC CACGGTAAGA CCAAATTGCT CGATGCTGTG 
CGCTCAACCC GCGTGGCGGA AGGCGAAGCT GGCGGGATTA CCCAGCACAT TGGCGCGTAT 
CAGGTTGAAA TCCATGGCCG CAAAATTTCG TTCTTGGATA CGCCTGGTCA CGAAGCGTTT 
ACCGCAATGC GGGCACGGGG AGCCACGGTT ACCGATATTG TTATTTTGGT GGTAGCTGCC 
GACGACGGTG TGATGCCGCA AACGGCTGAG GCAATTGCCC ACGTCAAAGC GGCTGGTGTG 
CCAATGATCG TGGCAATCAA CAAAATCGAT GTGCCTGGAG CCAATCCCGA CCGCGTGCGC 
CAACAACTTG CTGGCGAAGG TGTAACTACC GAATCGTGGG GCGGCGATGT GCCCGATGTC 
GAAATTTCGG CCAAGCACAA GAAAAATATC GATGGCCTGT TGGATATGGT CTTGTTGGTC 
GCCGATTTGC AAGAATTGAA GGCCAACCCA GACAAACCAG CAATCGGTAC AATCGTTGAA 
GCTGAGCTTG ATAAAGGCCG TGGCCCAGTC GCAACCGTGC TGATTCAAAA CGGCACGCTG 
CGCCAAGATG ATATTGTGGT GGTCGGGGCA ACCCACGGCA AGATTCGCGC AATGTTTACC 
GACATTGGCC GCCGGATTCG CATCGCTGAG CCAGCCACAC CAGTCTCGAT CATTGGGCTT 
TCAGAAGTGC CACAGGCTGG CGATATTTTG CAAGTGCTCG ATGATCCACG GATTGCCCGC 
GAGGTCGCAA CGGTACGCCA ACGCCAACGC CAAATGGAGC ATATGGCCAA TCAGCTTGGC 
AAAGCTACCA CGCTTGATGA AGTGTACAAA CAAATTCAAG CAGGCAAAAT CAAAGATCTC 
AATATTATTC TCAAGGCTGA CGTGCAAGGC TCAATTGGGG CAATCGAACA CTCATTGGCT 
CAGTTGAACG AGAAACAAAG CGAGATCCAA ATCAAGATTT TGCACCGTGG TACTGGCACA 
ATCAGCGAAT CGGACGTGAG CTTGGCCGTG GCTTCGCACG CGATTATCAT TGGCTTTAAT 
GCTCGGCCCG ATGCTGCTGC ACGCCGCAGC GCTGAAGCCA ACGGGATTGA TATTCGCTTC 
TACAACATCA TTTACCAATT GATCGAAGAC CTCAACAAGG CCATGATCGG GATGCTCGAT 
CCTGAGATCA AAGAAGTAAC CGATGGCTTT GCTGAAGTGC GCAATACCTT CCGCTTGCCA 
TCACGCGAAG TTGTGGCTGG CTTGATGATG ATCGACGGTA AAGTTACCCG TAACTCATTG 
GTACGGGTCT TGCGCTCAGG GGTCGTGCTG CACGATGGCC GAATTGGCTC GCTGCGCCGT 
TTCAAAGACG ATGTGCGCGA AGTGCTTTCA GGCTATGAAT GTGGGATTCA GATCGATGGC 
TTCAACGACA TCGAAACTGG CGATACCATG GAATTCTATC GCAAGGAAAA GATTATTCGT 
ACCTCGTAA 

 

Protein sequence

MARPVAPARP RGPVELGPVM TVRELSEALS VGAADIIKEM LKQGILANIN QQLDYETAAV 
IAAEFDIETS EHVPERMAGL VDDIGDALRA ETAENLKTRP PVVTIMGHVD HGKTKLLDAV 
RSTRVAEGEA GGITQHIGAY QVEIHGRKIS FLDTPGHEAF TAMRARGATV TDIVILVVAA 
DDGVMPQTAE AIAHVKAAGV PMIVAINKID VPGANPDRVR QQLAGEGVTT ESWGGDVPDV 
EISAKHKKNI DGLLDMVLLV ADLQELKANP DKPAIGTIVE AELDKGRGPV ATVLIQNGTL 
RQDDIVVVGA THGKIRAMFT DIGRRIRIAE PATPVSIIGL SEVPQAGDIL QVLDDPRIAR 
EVATVRQRQR QMEHMANQLG KATTLDEVYK QIQAGKIKDL NIILKADVQG SIGAIEHSLA 
QLNEKQSEIQ IKILHRGTGT ISESDVSLAV ASHAIIIGFN ARPDAAARRS AEANGIDIRF 
YNIIYQLIED LNKAMIGMLD PEIKEVTDGF AEVRNTFRLP SREVVAGLMM IDGKVTRNSL 
VRVLRSGVVL HDGRIGSLRR FKDDVREVLS GYECGIQIDG FNDIETGDTM EFYRKEKIIR 
TS