Gene HS_1112 details

Gene Information

• Locus tag: HS_1112
• Symbol: comE
• ID: 4240613
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haemophilus somnus 129PT
• Kingdom: Bacteria
• Replicon accession: NC_008309
• Strand: +
• Start bp: 1248472
• End bp: 1249605
• Gene Length: 1134 bp
• Protein Length: 377 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 638104675
• Product: competence protein E
• Protein accession: YP_719324
• Protein GI: 113461255
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4796] Type II secretory pathway, component HofQ
• TIGRFAM ID: [TIGR02515] type IV pilus secretin (or competence protein) PilQ

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0144354
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTAATTA AAAATTTCTT ATATTTCTTT TTGTTCTTAT TCACAGTAAG TGTGGAATTA 
TCTGCTAGAG ATCCCTTTGA TAAAAGACAA AGAAGCATAA AAAAAGAGAC AGATATACAA 
ATAGATACAA AGGAAAATTT GTCAAAATCG ACTAATGAGC CAAATTTAAC GACGACTTCG 
ATCAAATTAC ATTATGCTAA AGCGGCTGAT GTAATGAAAT CACTGACTAC AGGTCAAGGT 
TCATGGCTTT CATCAAATGG AACTTTTAGT TTTGATGAAC GAAGTAACTT GCTCTTAATT 
CAGGATGATC AGGAAACTCT CAATGCCTTA AAAAAATTAA TCAAAGAAAT GGATCAACCT 
ATTGAACAAA TTGCAATTGA AGCGAGAATT GTAACAATTA GTGATGAAAA TTTAAAAGAA 
TTAGGGGTTC GTTGGGGAAT TTTTGAGCCT ACAAATAACG CTCATCATCT TTCAGGCAGT 
CTAGCGGCAA ACGGATTTCA GCATTTAACG GAACAACTTA ACGTCAATTT TGCTACTGCC 
GCAACACCTG CAGGTTCTAT TGCTTTACAA ATTGCCAAAA TTAATGATCG ACTTTTAGAC 
TTAGAACTTA CCGCACTTGA ACGAGAAAAT AATGTGGAAA TTATTGCAAG CCCTCGTTTA 
CTTACAACGA ATAAGCAAAG TGCAAGTATT AAACAAGGAA CTGAAATTCC TTATGTTATT 
ACCGGCAAGA AATCTGATGA ACAGAAAGTA GAGTTTAGAG AAGCAGTTTT AGGATTAGAA 
GTAACGCCAC ACATTTCTAA AGACAATACT ATTTTACTGG ATCTCATTGT AAGCCAAAAC 
TCCCCTGGAA GTCGTATTAC TTATGGGCAA AATGAAATGG TATCTATTGA TAAACAAGAA 
ATTAATACTC AAGTTTTTGC ACGAGATGGG GAAACGATTG TGTTGGGTGG CGTATTTCAC 
GATACAATCA CAAAAGGAGT AGATAAAGTA CCGCTGTTAG GAGACATACC TATATTAAAA 
AGACTGTTCA GCCGTGAAAG TGAAAGACAC CAAAAACGTG AATTAGTAAT TTTTGTTACC 
CCAAGGATCA TTCGTTCAGA ACAACCTAAT GAAATAATAA AACCATTAAA ATAG 

 

Protein sequence

MLIKNFLYFF LFLFTVSVEL SARDPFDKRQ RSIKKETDIQ IDTKENLSKS TNEPNLTTTS 
IKLHYAKAAD VMKSLTTGQG SWLSSNGTFS FDERSNLLLI QDDQETLNAL KKLIKEMDQP 
IEQIAIEARI VTISDENLKE LGVRWGIFEP TNNAHHLSGS LAANGFQHLT EQLNVNFATA 
ATPAGSIALQ IAKINDRLLD LELTALEREN NVEIIASPRL LTTNKQSASI KQGTEIPYVI 
TGKKSDEQKV EFREAVLGLE VTPHISKDNT ILLDLIVSQN SPGSRITYGQ NEMVSIDKQE 
INTQVFARDG ETIVLGGVFH DTITKGVDKV PLLGDIPILK RLFSRESERH QKRELVIFVT 
PRIIRSEQPN EIIKPLK