Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HS_1050 |
Symbol | ribD |
ID | 4240548 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haemophilus somnus 129PT |
Kingdom | Bacteria |
Replicon accession | NC_008309 |
Strand | - |
Start bp | 1157428 |
End bp | 1158558 |
Gene Length | 1131 bp |
Protein Length | 376 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638104611 |
Product | diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase |
Protein accession | YP_719262 |
Protein GI | 113461193 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0117] Pyrimidine deaminase [COG1985] Pyrimidine reductase, riboflavin biosynthesis |
TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain [TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.411969 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACCAA CATTTTCAGC TCAAGACGAA TATTTTATGC AGATAGCTTT AGAACTTGCG AAAAAAGGCA TATTTACCAC AACACCTAAT CCTGCTGTGG GCTGTGTTTT AGTCAAAAAT GGTGAAATTG TTGGGAGAGG TTTTCATTTT AAAGCGGGGC AACCCCATGC GGAAGTTATG GCATTACGTG ATGCCGGTGA TAGAGCAAAG GGGGCAACTG CTTATGTGAC TTTAGAGCCT TGTTCTCATT TCGGAAGAAC GCCTCCTTGT GCACAAGGAC TAATTGAAGC AGGTATTCGC AACGTTATTG TGGCAATGAA AGATCCTAAT CCGCAAGTTG CAGGCAAAGG GTTAGCTATG TTGCAAGCAG CAGGTATTGA AAGTGCGGTA GGATTATTAC AAGAAAAAGC GGAATTATTA AACAAAGGTT TTTTAACACG AATGAGAACA CAGAAACCTT TTGTTATTTT GAAAATGGCA ATAAGCCTTG ACGGTCGAAC TGCTATGGCT AATGGCGAGA GTAAATGGAT TAGCGGAGAA CAGGCACGGC AAGACGTACA GCAAGAGCGG GCTAAAGTTT CTGCAATTTT ATCGACAGCT AAGACGGTGT TAGCCGATGA TCCCTTGTTA AATCTTCGTT GGGAGCAATT TCCATCGGAA TTACAACAAA ATTATAAAGT TGAAGAAGTG CGTCAACCTG TCAGAATTAT TCTTGATCGT CTGCATCTTG TGACACCTCG TCATAAATTA TTTCAATGTC AATCTCCCGT TTGGCTGGTG GGTGATAAAG AGCGTGATAT GTCAGCGTTT CCTGATTATT GTCAATATAT AAAATTATTC CCAAGTAACG AGCATTCTTA TTTGGAAAAC TTGTTGATTG AATTGGCAAA GCGTCAGATT AATAGTCTTT GGTTAGAAGC GGGAGAAACT TTAGCCGGTG CATTTATTGA GGAAAATTTA GTGAATGAGC TCATTATTTA TATGGCACCA AAATTACTGG GTAATGAAGC TCGTGGTTTT TGCCATTTGC CACATTTGAA GCGTTTAGCC GATGCACCAA AGTGGCAATT GTTATCTTTG GCACAAATTG GCGAAGACAT TAAGTTGAAT TATCAGCGTC ACATTTTATG A
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Protein sequence | MQPTFSAQDE YFMQIALELA KKGIFTTTPN PAVGCVLVKN GEIVGRGFHF KAGQPHAEVM ALRDAGDRAK GATAYVTLEP CSHFGRTPPC AQGLIEAGIR NVIVAMKDPN PQVAGKGLAM LQAAGIESAV GLLQEKAELL NKGFLTRMRT QKPFVILKMA ISLDGRTAMA NGESKWISGE QARQDVQQER AKVSAILSTA KTVLADDPLL NLRWEQFPSE LQQNYKVEEV RQPVRIILDR LHLVTPRHKL FQCQSPVWLV GDKERDMSAF PDYCQYIKLF PSNEHSYLEN LLIELAKRQI NSLWLEAGET LAGAFIEENL VNELIIYMAP KLLGNEARGF CHLPHLKRLA DAPKWQLLSL AQIGEDIKLN YQRHIL
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