Gene HS_0559 details

Gene Information

• Locus tag: HS_0559
• Symbol: hsdR
• ID: 4240042
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haemophilus somnus 129PT
• Kingdom: Bacteria
• Replicon accession: NC_008309
• Strand: -
• Start bp: 593223
• End bp: 596423
• Gene Length: 3201 bp
• Protein Length: 1066 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 638104108
• Product: type I site-specific deoxyribonuclease, restriction subunit
• Protein accession: YP_718770
• Protein GI: 113460704
• COG category: [V] Defense mechanisms
• COG ID: [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
• TIGRFAM ID: [TIGR00348] type I site-specific deoxyribonuclease, HsdR family

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.193671
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTAAGA AAATACCCGA ATTAAAATTT GAAAAAACCT TAATTGAATA TCTTTGTACA 
GGAACAATTA CGGCAACGGA TAATATGATT GGCGAGCCGC CTGCGGATTA TGTAGTGCGT 
ACCAAATTGT GGCAATATGA GCCAAGCATT AAAACGACGG AAGATTTATG GAAAAATTTT 
AAAAGAATTT TAGAAAAGCT CAATCAAAAA ACCTTAGATC GTCCTTTAAG TGCGGTGGAA 
TTTGCACAAG TTAAACGTAC TATTTCTAAT TTATCCACGC CTTATGCCGC AGGGCAGTTT 
CTTTATGGCA CAAACGGTGT GTCACAAATT GAAATTGATT TAGATGATGA TCGTCATGTG 
TTTTTAACCG TATTTGACCA AAAACAAATC GGTGCGGGCG ATACGGTGTA CCAAATTGTG 
AATCAAATTA AACGACCGGC GATTATTGCA GGAAAAGAAA ATCGACAATT TGATACTACG 
TTGTTGATTA ATGGCTTGCC CATTATTCAA ATTGAAGAAA AGAAAGAAAC GCATGATATT 
AACGAAGCCT TAAATCAAAT GCACCAATAT ATCGCGGAAA ATCAATACAG CGATATTTTT 
TCTACGTTAC AAATTCTGAT TGCGATTACG CCAAACAATG TGAAATATAT GGCGAATACC 
ACAGCAGATC GCTTTAATAA AGATTTTGCC TTCAACTGGC AACGTCAATC GGACAATAAA 
CCGGTTTATC ACTGGAAAGC CTTTGCCGAT TCCATGTTGA GTATTCCCAT GGCACATCAA 
ATGGCGACTA ACTATATGAT TTTAGATGGT ACGCCGAATA AGCAAACCCT AAAAGTAATG 
CGACCTTATC AAGTTTATGC TACGCGTTGT GTGATGGATA AACTCAAACG GGCGGATTTC 
GATCAAGCGT TGAATAAACT CGGTTATATT TGGCATACCA CAGGTTCAGG CAAAACTATT 
ACGAGCTTTA AAACCGCTTG GCTGGCAAGT CGTTCGCCGA AAGTGGATAA AGTGGTTTTT 
TTAGTGGATC GTATTGCACT GACTAACCAA ACTACCGAAA ACTATCGAGC TTATGATCCT 
GATGCCACAG AAGATAGTCT AGGTAGTGTA CTGGATACCA ACAACACCAC AGATTTGAAC 
CGCAAATTAC ACAGCAAAGG CAGTCAAATT ATTATTACCT CTGTGCAAAA ACTGGATACC 
TTGGTTAAAC GCACTTCTTT CAAGGCACCC GAAAAAAACA TTGTGTTTAT TGTGGATGAA 
GCTCATCGTT CTACAGGCAG TGATAATTTT GCTGCGATTC AAAAAAAATT TAAACATTCT 
GCGTGGATTG GTTACACCGG CACGCCAATG TTTGATGACA CTACCAAAGG CTTACGAACT 
GAAGATATTT TCGGTGAACT CTTGCACGCC TATACCATTC GAGAAGCAAT TGCTGATCGT 
AATGTGTTGG GTTTTAAAGT GGATTTTGAA ACCACGATTA GCGAAAAAAG TATGAAAGAA 
GCACATCTAC CGAAATTCTA TCGCCTTAAA TATCCTCATT GGACGGAAGA ACAAATTGCC 
TTGAAGATTG CCAATCTCAC GCAACAAGAT ATGGACGACA GCATCGAACC GAGTTTTTAT 
GACGAAAATG AAGAACACGT CAAATTAGTG GTGGAAGATA TTTTCAAACA TTGGAAAAAT 
CGCTCCAATT GGGATAACAA ACGTAATCGT GGACGATATA ACGCCTTGCT GACCACGCAC 
GTGGGTGGCG GCAAAGCCAG TACACCAATG GCAATGATGT ATTTCCGTGA ATTCCAACGC 
ATCAATAAAG TGCGGTCAGA AAAGGGGGAG TTTTTGCTAA AAGTTGCTGT GACCTTTAGC 
CAAAATACCA GCAATAACGA CACCATGCTT GAAACCAACC AAGGATTATT CGAGGCAATT 
CAACATTACA ACAGCGAATT TGGCACTAAC TTCACTATGT CTGATGTATC GGCTTATACT 
CAAGATGTCA CCAGCCGTTT AAATCGCACC GCTGTGGACA AAAAATATTT AGACCTCGTG 
ATTGTCGTAG ATCAGTTACT AACAGGATTT GACGCCCCTG AATTAAATAC GCTTTATGTT 
GACCGCACTT TAAAAGGTGC AGGGCTTATT CAAGCCTATT CCAGAACCAA TCGTGTAGCG 
GATATGCGTG AAAAACCTTG GGGGCGGATT ATCAATTACC GCTGGCCTGC CCATAATGAA 
AAGTTAATGA ATGAGGCGTT GTCCGTTTAC GCCAACAAAG ATTCCGCCAA ATTATCCGAT 
GAAGAGCGAA AAGTGAATAA TACCAAGGAT AAGATTACTG CACCAAAATA CGAAGAATTG 
CTCGATGACA CCAAACAGAT TGTGGAAAAT CTGCGAGAAA TAACGGATAA CTTTAGCCAA 
TTGCCACCGT CTGAAGCGAA AAAATGGGAA ATGTTGGAAC AATTACGCAC CTATACCGCC 
AATATTGCCA AAATCAAGCA ATATTCTGCG GAAGATGAAA ATGGTGAATT TATCGGTTTT 
GATTATGAAA ATCCGGATAA ATTGATTCAA GAACTCGGCA TGACCAGTGA AGAAGAAAGT 
ATGCTCACCA ACACATTGTC CAACGAACTC AAACTGCATT TAGCAAAAAG CCGAAATGTG 
CCAGTGATAC AAATTGAGCT ACAAATGACC CACGTTAAAG ACGTGGAAAT TAATTACGAT 
TACTTAACTG AATTAATTTC CAGCTTGTTG GCACAAGTAG AGGCAGGTGA AACGGAAAAA 
GCCAAAGAAA CGGAAAAAGA ATTGGAAAAA TTTGCTAACG GCTTGGAAGA TCGCAGTTTT 
GCACAACGCA TTAACCGTGC GGCAAAAGCG ATTATGAAAG GTGTGTTCAA ATTAAAAGAT 
GGGTTTAAAA AAGACGGCAT TTCTATTGTG GAACAAGCGA ATAACGCCAC CCAAGATCAA 
CAATTTTTGG ATTTTCGTCT CCAATGGGGA TTAACGGAGG TGATTACCAA CGCCCAACTT 
CGACAGCTTT TTGCCAAACA TCAATTTCAA CAAAAAGATT TAGATGACAA TAATCAGCTT 
ACGGATTTAA TCAAACAAGC AGGTCTCACT TATCCCGAAC TTGCACAAAA TGATGAAGTA 
AAAAAACTGA CAAAAATGAA ATACCGCAAC CGGTTGCGTC ATACCATTTA CGAACTTGCA 
GATGAGTTTG TGGGGGAATA G 

 

Protein sequence

MTKKIPELKF EKTLIEYLCT GTITATDNMI GEPPADYVVR TKLWQYEPSI KTTEDLWKNF 
KRILEKLNQK TLDRPLSAVE FAQVKRTISN LSTPYAAGQF LYGTNGVSQI EIDLDDDRHV 
FLTVFDQKQI GAGDTVYQIV NQIKRPAIIA GKENRQFDTT LLINGLPIIQ IEEKKETHDI 
NEALNQMHQY IAENQYSDIF STLQILIAIT PNNVKYMANT TADRFNKDFA FNWQRQSDNK 
PVYHWKAFAD SMLSIPMAHQ MATNYMILDG TPNKQTLKVM RPYQVYATRC VMDKLKRADF 
DQALNKLGYI WHTTGSGKTI TSFKTAWLAS RSPKVDKVVF LVDRIALTNQ TTENYRAYDP 
DATEDSLGSV LDTNNTTDLN RKLHSKGSQI IITSVQKLDT LVKRTSFKAP EKNIVFIVDE 
AHRSTGSDNF AAIQKKFKHS AWIGYTGTPM FDDTTKGLRT EDIFGELLHA YTIREAIADR 
NVLGFKVDFE TTISEKSMKE AHLPKFYRLK YPHWTEEQIA LKIANLTQQD MDDSIEPSFY 
DENEEHVKLV VEDIFKHWKN RSNWDNKRNR GRYNALLTTH VGGGKASTPM AMMYFREFQR 
INKVRSEKGE FLLKVAVTFS QNTSNNDTML ETNQGLFEAI QHYNSEFGTN FTMSDVSAYT 
QDVTSRLNRT AVDKKYLDLV IVVDQLLTGF DAPELNTLYV DRTLKGAGLI QAYSRTNRVA 
DMREKPWGRI INYRWPAHNE KLMNEALSVY ANKDSAKLSD EERKVNNTKD KITAPKYEEL 
LDDTKQIVEN LREITDNFSQ LPPSEAKKWE MLEQLRTYTA NIAKIKQYSA EDENGEFIGF 
DYENPDKLIQ ELGMTSEEES MLTNTLSNEL KLHLAKSRNV PVIQIELQMT HVKDVEINYD 
YLTELISSLL AQVEAGETEK AKETEKELEK FANGLEDRSF AQRINRAAKA IMKGVFKLKD 
GFKKDGISIV EQANNATQDQ QFLDFRLQWG LTEVITNAQL RQLFAKHQFQ QKDLDDNNQL 
TDLIKQAGLT YPELAQNDEV KKLTKMKYRN RLRHTIYELA DEFVGE