| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_0382 |
|---|
| Symbol | |
|---|
| ID | 4239858 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haemophilus somnus 129PT |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008309 |
|---|
| Strand | + |
|---|
| Start bp | 391907 |
|---|
| End bp | 393883 |
|---|
| Gene Length | 1977 bp |
|---|
| Protein Length | 658 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638103925 |
|---|
| Product | integral membrane protein |
|---|
| Protein accession | YP_718592 |
|---|
| Protein GI | 113460528 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
|---|
| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGATT CTGTAAAAAT TGACACCGCA CTTGGTGCCA AAGAACAAGA GATTTTGGAA
AAATATGACC GTGAATCGGT CACTCGTCAA TCCAGTAGCC AATTTAATAA AGGGTTAATT
ACGCTGGTTT CGGTTTTATA TTCCCTTTTT CATTTATACA CCACCTTTTA CCCCCTACCG
ACGTTAATCC AGCGTGCAGT ACACGTGGGC GTTGGAGCGA TATTAATCCT ATTAATTTAT
CCGGCATCGA AAAAACGTCG CCAAGGTTCT GTTGCATGGT ATGACTGGTT ATGGGTTATT
GCCGGTACGA GCGGTATGCT GTATCTCATC AACCAATACA ATGACATTAT GACCGTCCGA
GGTGGTATTC CAAATAGCAC AGATATTGTG ATGGCAATCA TCACTGTGCT AGTGGTGCTT
GAGGTAACGC GTCGCGTCAC CGGTTGGATT TTGGTGATTT TTTCCTTGCT CTTCTTAATC
TATCCATTCA TCAGCTCAAT GGATTTTATG CCGGACAGCC TCCTCACTCG CCCTTATGAT
GTTGGTGATA TTTTTGGTCA GCTTTATTTA AAAACCGAGG GGTTATATTC CTCTGCTGTG
GGGGCTTCCG TTTCCTTTAT TTTCTTATTT ATTTTATTTG GTGCTTTCCT AAGTAAATCG
GGAATGGGGC AATTATTTAA TGATTTAGCC TTAGCGATCG CTGGTGATAA ACAAGGGGGA
CCGGCGAAAG TAGCGGTAAT TTCCAGTGGC TTTATGGGCA GTATTAACGG GGCAGCGGTT
GCCAACGTGG TGAGTACTGG AGCGTTTACT ATTCCATTAA TGAAAAAAAT CGGTTATCAC
AAAAACTTTG CCGGTGCGGT AGAAGCCAGT GCATCCGTTG GTGGGCAAAT TCTCCCGCCG
ATCATGGGAG CAAGTGCATT CATTATGGCG GAAACGACAG GCGTAAGCTA CGGAACTATT
GCACTTGCAG CTTTACTTCC TGCCTTACTT TACTATCTCG GCGTCATTGC ACAAGTCCAC
TTTCGTGCTG GTAAACAAAA CCTAAAAGGC GTCCCTAAAG ATCAATTGCC AAGGGTAAAA
GCAGTGATGA AAGCACGTGG TCATATGCTA TTGCCGATCT TAGCCCTTAT CATCTTTTTG
GCACAATCCG TACCAGTAGG ATATGCTGCC TCTTATACTA TTGTGCTTAC CATTTTAGTC
AGTCAATTGC GTCAAGAAAC CCGTATGGGC ATTAAAGATG TAATTGAGGC ATTGGCTGAC
GGGGCAAAAC AGTCGCTTTC CGTTATGTCA GCTTGTGCGA CGGTAGGAAT TGTGATTGGC
GTGATGAACC TTACCAGTTT TGGTACGGTG ATTACCTCTT CTATCGTCAC ATTAGGTGCA
GGATCGCTCT TTTTAACCTT ATTTTTAACG ATGATTGCCT CCATGATCCT TGGCATGGGA
CTACCTTCTA TTCCAGCATA TATCATTACC GCCACCATGG CAGCTCCGGC ATTGGCAACC
TTTGATGTCC CGGTATTAGT GGCGCATATG TTCGTCTTTT ATTTTGGTAT TTTCGCTAAT
ATCACACCAC CGGTCGCTCT TGCTGCTTTT GCTGGTGCGG GAATTGCACA AGGTGACCCA
ATGAAAACCG GCTGGCAATC CTTGCGTCTA GCCCTAGCGG GTTTTATTGT ACCGTTCATA
TTCGTTTATA ATCCAAATAT GCTGATGATT GATGTTACCA ATGCTGCGGT TATTGCCAAA
ACTTTCCCTC TACCAAGTGC ATTCGAGATT ATTAATGTTA TCGTATCCTC TGTTATTGGC
GTTTTGGGAT TATCTGCTGC GGTAGAGGGG TATCTGAAAA ATACTATACC AATATGGCAA
CGTATTATTT TAGCAATCGG TTCGCTTATG TTGATTATTC CGGAATGGAT CACGGATATT
ATCGGCATTG CTGTTGTTGT AGTCATAGCA CTACTTAATG TTCGCCAATG TGACTAA
|
|---|
| Protein sequence | MTDSVKIDTA LGAKEQEILE KYDRESVTRQ SSSQFNKGLI TLVSVLYSLF HLYTTFYPLP
TLIQRAVHVG VGAILILLIY PASKKRRQGS VAWYDWLWVI AGTSGMLYLI NQYNDIMTVR
GGIPNSTDIV MAIITVLVVL EVTRRVTGWI LVIFSLLFLI YPFISSMDFM PDSLLTRPYD
VGDIFGQLYL KTEGLYSSAV GASVSFIFLF ILFGAFLSKS GMGQLFNDLA LAIAGDKQGG
PAKVAVISSG FMGSINGAAV ANVVSTGAFT IPLMKKIGYH KNFAGAVEAS ASVGGQILPP
IMGASAFIMA ETTGVSYGTI ALAALLPALL YYLGVIAQVH FRAGKQNLKG VPKDQLPRVK
AVMKARGHML LPILALIIFL AQSVPVGYAA SYTIVLTILV SQLRQETRMG IKDVIEALAD
GAKQSLSVMS ACATVGIVIG VMNLTSFGTV ITSSIVTLGA GSLFLTLFLT MIASMILGMG
LPSIPAYIIT ATMAAPALAT FDVPVLVAHM FVFYFGIFAN ITPPVALAAF AGAGIAQGDP
MKTGWQSLRL ALAGFIVPFI FVYNPNMLMI DVTNAAVIAK TFPLPSAFEI INVIVSSVIG
VLGLSAAVEG YLKNTIPIWQ RIILAIGSLM LIIPEWITDI IGIAVVVVIA LLNVRQCD
|
|---|
| |