| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1406 |
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| Symbol | rrlA |
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| ID | 8710029 |
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| Type | rRNA |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1480074 |
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| End bp | 1483119 |
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| Gene Length | 3046 bp |
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| Protein Length | |
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| Translation table | |
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| GC content | 55% |
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| IMG OID | 646483332 |
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| Product | 23S ribosomal RNA |
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| Protein accession | |
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| Protein GI | |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000288708 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | AAGGGCGTAT GGTGGATGCC TTGGTAGACA GGACCGATGA AGGACGTGAC GGGCTGCGAT
ATGCCTCGGG GAGCTGCCGA GTGGGCTTTG ATCCGAGGAT TTCCGAATGG GGAGACCCGG
CCACTGTTAT GAGTGGTCAC CACAGTTTTT GTGGGGGGTA CGCAGGGAAG TGAAACATCT
CAGTACCTGC AGGAAAGGAT ACTCCGTGAG TAGTGGCGAG CGAAAGCGGA TCAGGCTAAA
CCGGGTGCGT GTGATAGCCG TCAGGTGTTG CGCATTCGGG GTCGTGGGAT GGACTGTTCA
GCCTCTGACG GGGTTGAGGA GAGTGATAAA ATGTCGTGCT AGGTGAATGG GATTGAATTC
CCAGCCGTAG AGGGTGATGG CCCCGTAGCT TGTCGTGCGA TGTCTCTTTA TGTTTATTCC
CAAGTAGCGC GGGACTCGTG GAATCCCGCG TGAATCTGCC CAGACCGTTG GGTAAGCCTA
AGTATTCCTG TCTGACCGAT AGTGTACTAG TACCGTGAGG GAAAGGTGAA AAGCACCCCG
GGAGGGGAGT GAAATAGTTC CTGAAACCGT GCGCTTACAA TCCGTCGGAG CCTTCTTTGT
GGGGTGACGG CGTGCCTATC GAAAAATGAG TCTGCGAGTC AGTGGTATGT GGCGAGGCTA
ACCCGGGTGG GGGAGCCGTA GCGAAAGCGA GTTTTAAAAG GCGTTTGAGT CGCATGTCCT
GGACCCGAAG CGGGATGATT TAGCCCTGAG CAGGTTGAAG CGCGGGTAAG ACCGTGTGGA
GGACCGAACC CACCTAGGTT GAAAACTGGG GGGATGACTT GGGGTTAGGG GTGAAAGGCC
AATCAAATTC CGTGATAGCT GGTTCTCTCC GAAATGCATT TAGGTGCAGC GTCGTGTTAT
TGCTTACAGG GGGTAGAGCT ACTGGATGCT TGCGGGCCCA TACCGGGTAC CAATAGCAGC
CAAACTCCGA ATACCTGTTA GGTTTATCAC GGCAGTGAGT CGGCGGGGGA TAAGCTCCGT
CGTCAAAAGG GAAACAGCCC TGATCGTCGT CTAAGGTCCC GAAGCGCGTG CTAAGTGGGA
AAGGATGTGG AGTCGCATAG ACAGCCAGGA GGTTGGCTCA GAAGCAGCCA TCCTTGAAAG
AGTGCGTAAC AGCTCACTGG TCTAGTGGTT CCGCGCCGAC AATGTAGCGG GGCTTAAGCA
CGCCACCGAA GACGCGGCTG CATGATTTGT TTCATGCGGG GTAGGAGAGC GTCCTGTATG
GGGTGAAGCG GCAGTGTGAA CTTGTCGTGG ACTTTACAGG AGTGAGAATG CAGACATGAG
TAGCGAGAGA CGGGTGTGAA TCCCGTCCGC TGAATGACTA AGGGTTCCGG GGCCACGTTC
GTCGTCCCCG GGTGAGTCGA GTCCTAAGGC GAGGCCGACA GGCGTAGTCG AATGGATGAA
CGGGTTGATA TTCCCGTACC GGTGTTACAC CGTTCGAACT GAATCTGAGA GTACTAACCT
TCATTTGCTG GTTGATTGCC TTTCGGGGTT GTTGGCTGGT TTGTGTTGGG ACTGTATCGG
TAGTAGGTTA GCGTGGGAGT GACGCGGGTA GGTAGCCGGC TGCGGAGGTG GTTTTCCGTG
GCTAAGCGTG TGGGCTGTCT CCTAGGTAAA TCCGGGGGAT GTTAAAGCTG AGGCGTGATG
GGTAGGCTGT AAGGCTGATT CCGGTGATCC TGCTTGCCAA GAAAAGCTTC AACGTGAGGT
GTGATTCCGC TCGTACCCTA AACCGACACT GGTGGTCTGG TAGAGTATAC CGAAGCGATC
GGGCGAATCC TGGCCAAGGA ACTCGGCAAA TTACTCCCGT GCCTTCGGCA TAAGGGAGAC
CCCTGATGGT GATATGGTTT TACACTGTTG AGCTGTTGGG GGTGGCACAA GCTAGGGGGT
AGCGACTGTT TACCAAAAAC ACAGGAGCGT GCGAAGGCGT AAGCCGCTGT ATACGCTCTG
ACGCCTGCCC GGTGCCGGAA GGTTAAGAGG ATCCGTTAGC TTCGGTGAAG CGGTGAATTT
AAGCCCCGGT AAACGGCGGT GGTAACTATA ACCATCCTAA GGTAGCGAAA TTCCTTGTCG
GGTAAGTTCC GACCTGCACG AATGGCGTAA CGACTTCCCC ACTGTCTCGG CCAGGAGCCC
GGCGAAATTG CAGTACGAGT AAAGATGCTC GTTAAGCGCA GAAGGACGAA AAGACCCCGG
GACCTTTACT ATACCTTGGT ATTGTCGTTA GGTGTGGATC GTGTAGCATA GGCGGGAGGC
TGTGAAGCGT GGGCGCTAGC TTGCGTGGAG TCGACAGGTG AAATACCGCT CTTTCCATAT
CTGGCGTCTA ACCTCGACAC GTTATCCGTG TCAGGGACAG TGCCTGGCGG GTAGTTTAAC
TGGGGCGGTT GCCTCCTAAA GAGTAACGGA GGCGCTCAAT GGTCCGCTCA GCCCGGTTGG
CAATCGGGTG TTGAGTGTAA TCGCACAAGC GGGCTTGACT GTGAGACTGA CGGGTCGAGC
AGGGACGAAA GTCGGAGATA GTGATCCGGT GCCGGCGTAC GGACGTGGCA TCGCTCAACG
GATAAAAGGT ACCCCGGGGA TAACAGGCTG ATCATTCCCA AGAGTCCATA TCGACGGGAT
GGTTTGGCAC CTCGATGTCG GCTCGTCGCA TCCTGGGGCT GGAGCAGGTC CCAAGGGTTC
GGCTGTTCGC CGATTAAAGC GGCACGCGAG CTGGGTTCAG AACGTCGTGA GACAGTTTGG
TCTCTATCCT CTGCGCTCGT TGGAATGTTG AGGAGACCTG CCCATAGTAC GAGAGGACCT
GGGTGGACGA ACCTCTGGTA TGCCGGTCGT CACGCCAGTG GCGCTGCCGG TTAGCTACGT
TCGGAAGGGA TAACCGCTGA AAGCATCTAA GCGGGAAGCC TGCTCCAAGA TAAGCATTCC
TTGCACTTTA GTGTGTGAGC CCCCATGTAG AACACGTGGT TGATAGGCTA GATGTGGAAG
CCCTGTAAGG GGTGGAGCTG ACTAGTACTA ACGGGCGATG GTGACA
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| Protein sequence | |
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