| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1349 |
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| Symbol | trpB |
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| ID | 8708966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1615922 |
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| End bp | 1617115 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646483434 |
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| Product | tryptophan synthase, beta subunit |
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| Protein accession | YP_003374531 |
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| Protein GI | 283783777 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0133] Tryptophan synthase beta chain |
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| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000106047 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTAAACG CAGTTGAACA AAACATGTAT TACGGTGAAT TTGGCGGACA GTACGTACCA
GATATGATTC GTCCAGCACT CGACGCAGTA GCAGCAGCTT ACTTACAATA CAAAGACGAT
CCAGAGTTCC GCAATGAATT AGCTGGATTA TTAAAAGATT ACGACGGTCG CGAAACACCT
TTATACTATG CTGAATCTTT CACAAAATAT TTAGGCGGCG CAAAAGTATA TTTAAAGCGC
GAAGATTTAA ACCATCTCGG CGCTCACAAA ATGAATAATG TTCTCGGACA AATTTTACTC
GCTCAGCGCA TGGGTAAAAA GCGCATTATC GCTGAAACCG GAGCCGGTCA GCATGGCGTT
GCCACTGCTG CTGCAGCAGC ACGATTCGGT ATGGAATGCG AAATTTTTAT GGGCGCACTT
GATTGCGAAC GCCAAAAACT TAACGTTTTT AGAATGACTT TGCTCGGTGC AAAAGTTCAT
GCTGTTCAAG AAGGCACAAA AACTTTAAAA GATGCTGTAA CTGCAGCATT TATGGATTAT
GCACAGCACT TGGATGATAC CTTCTACATC GTTGGCTCCG CAGTGGGACC TTACCCTTAT
CCACAAATGG TTCGCGATTT TCAAAGCGTT ATTAGCAAAG AGTCGAGAAG GCAAATCCTA
GAAAAGGAAG GCAGATTGCC GAATGCTGTA ATTGCTTGCA TTGGTGGCGG TTCTAATGCA
ATTGGTTCTT TTGCAGCATA TATTGATGAT CTGTCTGTAC GATTGATTGG TGCTGAAGGC
GCAGGTAAAG GCGCTGATAC TCCTCAAAAT GCTGCTACTA TGACGAATGG AAAAGTTGGC
ATTACGGATG GCATGAAAAC TTATGTTCTT ATGGATGATG ACGGTAACGA GCTTCCAGCC
TACTCTATTT CTGCGGGATT GGATTACCCT GGAGTCGGCC CAGAACACTC ATATTTAAAG
GATTCTGGTC GCGCAGAATA CTACGCAATC ACTGATGATG AAGCAGTTCA AGCTTTTCGC
GCACTTTCTA GAGTTGAAGG AATCATCCCA GCTTTGGAAA GCTCACATGC AATAGCACAA
GCTATGAAGA TGGTTCCAAA GATGAGTAAG GATGACATTG TTTTAGTAAC AGTTTCCGGC
CGTGGAGATA AGGATGTGAA TCAAGTAGCA CGCTATCTTG GAATTGAATT ATAA
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| Protein sequence | MVNAVEQNMY YGEFGGQYVP DMIRPALDAV AAAYLQYKDD PEFRNELAGL LKDYDGRETP
LYYAESFTKY LGGAKVYLKR EDLNHLGAHK MNNVLGQILL AQRMGKKRII AETGAGQHGV
ATAAAAARFG MECEIFMGAL DCERQKLNVF RMTLLGAKVH AVQEGTKTLK DAVTAAFMDY
AQHLDDTFYI VGSAVGPYPY PQMVRDFQSV ISKESRRQIL EKEGRLPNAV IACIGGGSNA
IGSFAAYIDD LSVRLIGAEG AGKGADTPQN AATMTNGKVG ITDGMKTYVL MDDDGNELPA
YSISAGLDYP GVGPEHSYLK DSGRAEYYAI TDDEAVQAFR ALSRVEGIIP ALESSHAIAQ
AMKMVPKMSK DDIVLVTVSG RGDKDVNQVA RYLGIEL
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