| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1325 |
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| Symbol | |
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| ID | 8709531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1582560 |
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| End bp | 1583210 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 646483410 |
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| Product | transcriptional regulator, LuxR family |
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| Protein accession | YP_003374511 |
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| Protein GI | 283783757 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAGC AGATTGCTGT CGGAATTATT GACGATGATT CTTTTTGTTT ACGTGGTATT
AAAACTTATA TTGAGAAAAT CGTTCCATCT TGTCATATTT GCTGGTTTTC TACTTCTTAC
GAGAAAGCAT TATCGCTTTG TGCGGAAAAA TGTCCTGACG TATTGTTGAT AGACATGTAT
ATGGCTGGAG TTTCTGGAAC CAGGATATTG TATGAATTAC GGCGAAGATA TGAGCGTCCA
ATCATCATTG CTATCACTTC GTTTCCTATT AAAGATTATG CATTAACAGC ATCCGTAGCA
GGTGCTCAGT GCATTGTTGG CAAGAATCAC CCAAAAATAA TTTGTGACAT GCTCGATGAT
ATTAGTAACG GAATATTCTG TCCGCAGAAA ATAAATAATA TTCATTTTGA TGATGCTATG
GTAGCATTCC AAAGATTACA AAATAAGCCG AAAGTTGGTA TTCTTGCATT AACAAATCAT
GAACAAGAAA TTGTTAAACT ATGCGTGCAA GGCATGACAA ATGCACAAAT AGCGAAGAAA
TTATTTGTCG AAATTGGCAC CGTTGAGACA ATTCTTCGTC GTGTATGTAA GAAGATGGGT
ACTCTCAACC GTGCACAACT AATTGCTGCT TGGTTACATG ATGAGTACTA A
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| Protein sequence | MAKQIAVGII DDDSFCLRGI KTYIEKIVPS CHICWFSTSY EKALSLCAEK CPDVLLIDMY
MAGVSGTRIL YELRRRYERP IIIAITSFPI KDYALTASVA GAQCIVGKNH PKIICDMLDD
ISNGIFCPQK INNIHFDDAM VAFQRLQNKP KVGILALTNH EQEIVKLCVQ GMTNAQIAKK
LFVEIGTVET ILRRVCKKMG TLNRAQLIAA WLHDEY
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