| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1303 |
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| Symbol | |
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| ID | 8708863 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1557992 |
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| End bp | 1558843 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646483390 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_003374491 |
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| Protein GI | 283783737 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAGTA TGAGCGGAAA AGCAATACGT AAATGGTGGT GGTTATTTGC GCTGCCAACG
TTTGCTGCGT TTGTTGTTGG CTTCTTAGTG CCATTTATTA TGGGTGTGTA CTTGAGCTTT
AGAAAATTCA CTACTGTGAC TGATGGTAAG TTTGTGGGTT TTCGTAACTA CTATAGAGCT
TTAAAAGATC CGCATCTTGT TTATTCGTTT TTGTTCACAA CGCTTTTTGC AGTTATTACA
ACAATAATTA TTAATGTTAT TGCTTTTGCA ATTGCGTACA TGCTTACTAA GAAGTTCAAG
GGCACGACGA TATTCAGAGC CGTGTTCTTT ATGCCAAATC TTATTGGCGG TATCGTTTTA
AGCTATATTT GGCAGCTCTT GTTAAATGGT ATACTCGGCT ACTTCAATCG TACGATTACG
TTCTCTGAAG TATTCGGTTT CTGGGGCCTT GTGATTGTTG TTTGCTGGCA GCAAATTGGC
TATATGATGA TTATTTATAT CGCAGGAATG CAGGCTCTTC CAGGAGATGT TATGGAAGCA
GCTGCTGTCG ATGGTGCAAG CCCAAGGCAG ACTTTATTCA AGATTACTAT TCCATTGATG
ATGCCTTCTA TTACTGTTTG CACATTCTTA ACAATTACCA ACGGCTTCAA GCTTTTCGAT
CAGAACTTCG CATTAACTAA CGGTGGTCCG TCAAGGAAAA CAGAGATGTT AGCTCTTAAT
ATTTATAGAA CTTTCACTAC TCCAAGATGT GAAGGCGTTG GTCAGGCTCA GGCAGTCATG
TTCTTCATTG TCGTGGCTGT TATTGCTATG GTTCAGAATA TGCTCACTAG GTCGAAGGAG
GTAGCGGCAT GA
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| Protein sequence | MISMSGKAIR KWWWLFALPT FAAFVVGFLV PFIMGVYLSF RKFTTVTDGK FVGFRNYYRA
LKDPHLVYSF LFTTLFAVIT TIIINVIAFA IAYMLTKKFK GTTIFRAVFF MPNLIGGIVL
SYIWQLLLNG ILGYFNRTIT FSEVFGFWGL VIVVCWQQIG YMMIIYIAGM QALPGDVMEA
AAVDGASPRQ TLFKITIPLM MPSITVCTFL TITNGFKLFD QNFALTNGGP SRKTEMLALN
IYRTFTTPRC EGVGQAQAVM FFIVVAVIAM VQNMLTRSKE VAA
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