| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1293 |
|---|
| Symbol | |
|---|
| ID | 8709825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 1544462 |
|---|
| End bp | 1545298 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 646483380 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003374481 |
|---|
| Protein GI | 283783727 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATTA ATAGTGGTAA AGCAATAATG CGTGATAGCG GTAACGCGAA TAAGGAAATG
CTTGATGCAA ACGGCAAACC AATTCGTGCT GACCGTAACA TAAAAACTGG AATCACGCTC
AATAAACTCA AAATGCTCGG CGCTTTTATG CTTATGCTAG GTGCATTTAG TAACACAGTA
ATTGCACGAA TGTTCGGCGG AACAGTAACC AATAATATGT TTGCATTGAC AGTCATATTA
GTTTGTGAAT TTATAAGCTG GACTGCAGTG CCATGGTATG CGTGGATACT AGTACGCGGA
TACCATAACA CGCATAATTT GAATCTTTAC ATGTTGAGAT TGCTGATTTT AGCAGTGGTT
TGCGAAGTTC CATACGATTT GGTGAATTCA AAATGTTTGT TCGACATGCG TTCGCAAAAT
CCTGTATTTG CAATGGTTGT TTCCCTATTC GTACTTTCGA GTATAGATAC AATTAGGGAA
CGTTTAAGCG GATTTAGTAA AGGTTTTGCT ATTACCGTGC TTATCATTGC GGGTCTTCTT
TGGAATTTGA TAGGAAAAGT TTTTGTGCAG CATGGAATTT TCTTCGGCGG CGTAACTTTG
CTTATTTTCG TACTTCTTTT TGAATTATTA AAAAAGCGCG AAATTACTAT GGAGATGACT
GCAGGAATGT TCGGCGCTAT GTCGATGCTT ACACCTGGTA TTGGTGTAGC TGTGTTGCAT
TATCGTAGCC CTTATGGTGA TGGTCCTAAA AACTCGACGA CGTTCCGTTG TGTTATGTAT
GCGTGGTATC CGCTGATGTT GATCATTGCC GCATTATTTG CAGTATTCTT GCGTTGA
|
|---|
| Protein sequence | MSINSGKAIM RDSGNANKEM LDANGKPIRA DRNIKTGITL NKLKMLGAFM LMLGAFSNTV
IARMFGGTVT NNMFALTVIL VCEFISWTAV PWYAWILVRG YHNTHNLNLY MLRLLILAVV
CEVPYDLVNS KCLFDMRSQN PVFAMVVSLF VLSSIDTIRE RLSGFSKGFA ITVLIIAGLL
WNLIGKVFVQ HGIFFGGVTL LIFVLLFELL KKREITMEMT AGMFGAMSML TPGIGVAVLH
YRSPYGDGPK NSTTFRCVMY AWYPLMLIIA ALFAVFLR
|
|---|
| |