| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1269 |
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| Symbol | |
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| ID | 8708865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1516094 |
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| End bp | 1516360 |
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| Gene Length | 267 bp |
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| Protein Length | 88 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646483357 |
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| Product | phosphocarrier, HPr family |
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| Protein accession | YP_003374459 |
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| Protein GI | 283783705 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1925] Phosphotransferase system, HPr-related proteins |
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| TIGRFAM ID | [TIGR01003] Phosphotransferase System HPr (HPr) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.034972 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAATTG CAACTCGTAC TGTTACTATT GAAGACCCAG TTGGAATACA TGCTCGCCCA
GCGTCAGAAT TTTCTCAAGC CGCGATGTCC TCAAATTGCA TTGTAACGAT TGCGAAAGGC
GAAGGTACCC CTGTAAGTGC GAATAGCATT CTTTCAATTA TGGGATTGGG TATTACTAAA
GGAGATTCAA TCACAATTAC CGTTGATGGT GAAGACGCTG AAAATGTAGC TAACAATCTT
GTCGATGTAG TCACGAAAGG CGAATAA
|
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| Protein sequence | MAIATRTVTI EDPVGIHARP ASEFSQAAMS SNCIVTIAKG EGTPVSANSI LSIMGLGITK
GDSITITVDG EDAENVANNL VDVVTKGE
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