Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1256 |
Symbol | metG |
ID | 8709544 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1502264 |
End bp | 1504141 |
Gene Length | 1878 bp |
Protein Length | 625 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 646483344 |
Product | methionine--tRNA ligase |
Protein accession | YP_003374446 |
Protein GI | 283783692 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0143] Methionyl-tRNA synthetase |
TIGRFAM ID | [TIGR00398] methionyl-tRNA synthetase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.000206162 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGTCTATGA GTCATATTTT GGTGAATGTT GCTTGGCCGT ATGCTAACGG CCCTCGTCAT ATTGGTCACG TCGCAGGCTT CGGGGTCCCA TCAGACGTAT ATGCGCGTTA CGAGCGCATG AAAGGTAATG ACGTATTAAT GGTGTCTGGC ACGGATGAGC ACGGTACACC TATTTTGGTT GAAGCAGATA AGGAAGGTGT TTCTGCACAA GAGCTTGCTA ATCGTTATAA TCGTGTGATT ACTAAGGATT TGTGCGATTT AGGTTTGAGC TACGATTTGT TCACGCGTAC TACCACTGCA AATCACGAGC ATGTTGTGCA AGAAATGTTC CGTCAGTGCT TAAAGAACGG CTATATTTAC AAGGGCACTC AGAAGGTTGC TATTTCTCCT TCCACTGGTC GTACTTTGCC AGATCGTTAT ATTGAAGGCA CATGCCCATT GTGTGGCGCA GATGGTGCTC GTGGCGATCA ATGTGATGCT TGTGGAAACG AGCTTGATCC GGATGAGCTT ATTAATCCAG TTTCTAAAAT TAATGGTGAA ACTCCGCGCT TTGAAGAAAC TGAACATTAT TTCCTAGATT TGCCTGCTTT GGCTGAAGCG AATGTTAACT GGCTTCATTC TCGCGAAGGT TGGCGCACGA ATGTTATTAA TTTCTCGCTT GGATTATTTA ATGAAGTAAA GCCGCGAGCT ATTACGCGCG ATATTGATTG GGGCATTCCT GTTCCTGTTG AAGGATGGAT TGATAATCCA AATAAGCGTT TATATGTTTG GTTTGATGCT GTTATTGGCT ACTTGTCTGC ATCTATTGAA TGGGCTCGTC GACAAGGCAA GCCAGAGGCT TGGCGTGATT GGTGGTGTGA TCCTAAGTCT CCTGGATACT ACTTCATGGG CAAAGATAAC ATTACTTTCC ATTCTCAGAT TTGGCCTTCG GAAATGCTTG CCTACAACGG TGCTGGTTCT AAAGGTGGTG AGGCTGGCAT TTATGGCCCA TTGAACATGC CTGAACAGGT TGTTGCTTCT GAGTTCATGA CTATGGAAGG CAAGAAGTTC AGCTCTTCGC GCGGAATCGT GATTTATGTG AAGGATATTT TGGCACGTTA CCCTGTAGAT GCTGTGCGTT ACTACATTTC TATTGCGGGT CCAGAAAATT CTGATGCTGA TTTTACTTGG GCTGAGTTTG CTCGTCACAA TAACGAAGAA CTTGCTGCAA GCTGGGGTAA TCTTGTCAAT CGTGTGGCAA ATCTTATTAA TAAGAACTTT GGTGTAATTC CTCCTCTTGA TGAAGATTCT ATGACTGCAA TGGATCGCGC TCTTCTCGAT CAAACTTCTG ATGCTTTTGC TTTGGTTGGT AGTTTGATTG AGCGTCATCG TCAGAAGAAT GCTCTTACTG AAGCAATGCG AGTAGTTGCG GATATTAATA AATATATTTC TGCAACTGAG CCTTGGAAAA TTAAAGATGA TGAGGCTCGC CTTGGTACTG TGTTGCATGT TGCAGCTCAG GCTGTTTCGG ATGCTAATCA TCTGCTTGCG CCATTCTTGC CTCATGCAGC TCAAAAAGTT TGGGAAGCAC TTGGTGGCAC TGGCGTATTC TCGCCTTTGC CTCATATTGA AGAAGTTGAA GATTTGGATA ATCCAGACTT CAAGTATCCG ATTATTACGG GCGATTATCG CTTGGGGGAA ACTGTTCATC CTTGGGAGAG TGAGGAGTTG GTAGCAGGTA CGCCTGTGCC TAAGCCAAGT CCTATTTTTG CCAAGATTTC AAAAGAAGCA GTTGAGGAGG AGCTTGAGCG TTTTGCATCT GCTTTGTCCG AGCGTCAGCG TGTCGAAGCG GAAAGACTTG CTGCAGCAAA AAAATCTTTG GAAAATAGTG AGAAATAG
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Protein sequence | MSMSHILVNV AWPYANGPRH IGHVAGFGVP SDVYARYERM KGNDVLMVSG TDEHGTPILV EADKEGVSAQ ELANRYNRVI TKDLCDLGLS YDLFTRTTTA NHEHVVQEMF RQCLKNGYIY KGTQKVAISP STGRTLPDRY IEGTCPLCGA DGARGDQCDA CGNELDPDEL INPVSKINGE TPRFEETEHY FLDLPALAEA NVNWLHSREG WRTNVINFSL GLFNEVKPRA ITRDIDWGIP VPVEGWIDNP NKRLYVWFDA VIGYLSASIE WARRQGKPEA WRDWWCDPKS PGYYFMGKDN ITFHSQIWPS EMLAYNGAGS KGGEAGIYGP LNMPEQVVAS EFMTMEGKKF SSSRGIVIYV KDILARYPVD AVRYYISIAG PENSDADFTW AEFARHNNEE LAASWGNLVN RVANLINKNF GVIPPLDEDS MTAMDRALLD QTSDAFALVG SLIERHRQKN ALTEAMRVVA DINKYISATE PWKIKDDEAR LGTVLHVAAQ AVSDANHLLA PFLPHAAQKV WEALGGTGVF SPLPHIEEVE DLDNPDFKYP IITGDYRLGE TVHPWESEEL VAGTPVPKPS PIFAKISKEA VEEELERFAS ALSERQRVEA ERLAAAKKSL ENSEK
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