Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1184 |
Symbol | |
ID | 8709610 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1388036 |
End bp | 1389286 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 646483274 |
Product | hypothetical protein |
Protein accession | YP_003374381 |
Protein GI | 283783627 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1835] Predicted acyltransferases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTAGTAG AACAGAAACA ATCAGCGCAA AAAGTAGCGT CTTCTGCACA AGCTCAAGCG GTATTACAAT CGACCAAAGA CCTGCAAAAT GGCACACAAA AAGACCTGCA AGTTGAAGTC TTGCGAATTA TTGCAATGCT TATGATTGTG GCCTGCCACA TGATCATACA TTTGAACATT CGCGAGCACA GTTTCAATAT GGAACTTTTG CCGGCTCCAG GCTTGCGTTC AGCACTTAAA TTCTTAGTCG TACAATACGG TCAAGTTGGT GTCTCAACCT TCTTTATTAT TTCCGGCTAC TTTTTATGTC GCAAAACCTT CCGCTACCGA CGCGTTTTTG CAGCGTGGGC GCAAATGTTC TTCTACTGCA TTATCGTGCT GGCAGTAACC TTCGTAGCAG ACTGCTTTGG CTTACTTCCG GAAAATTTGA GCAACTTACT TCACGGAAAA GAACTTGTCT ACACGCTGTT GTGGAATGTG ACGCCATTTA CTTACCGAAG CTATTGGTTC ATGAGCGCGT ACTTAATCAT GCTCATGTTC ATGCCTTTTA TCAACATTCT TATAAGTCAC ATGACTCAGC GCAATCATGC TATGCTGCTG GTACTTCTTG CGTCAATCTC ACTTATTCCG CTATATTTTG GCAAAAATTA TACTTGGAAC GATATTATTT ACGCAATTTT TGGATATTTA GCCGGAGCTT TTATTGCGCA GTACGGTAGC GGAATAAAAA AACTTACTAC GAAGCGACTT TGTGCGTGCG TAGCAATATC TACTGTTCTT ATGCTCGCTT TCGACTATGT TGCTTCGTCC GGGAATAAGT TTGTGCGAGT TCTTACGTGG GATCAGCAGG TCCACAGCGG CATTGGAATA CTGCCAATGA TTATTGCAAT GTGTATTTTC ATTCTCGTAC ACCGAATAAA TATGCTGCGA ATTAAAGGAC TAGCAAGAAC CGTAATTTTG CGCGTTTCCA AAGCAACTTT CGGAGTGTAC CTTCTTCACG AGCACATGTT TATTTTCATA GCGTTGTGGA CGTTCGTGGC GTGGATGCTT CCTACAACTT CCTCAAGCGC ACTCATAGTG CTACTTTACG CAATTACTTT AATTTGTACG TACGCAGCAC TTTCAGTTGT TGCAGTTGTA ATAGATCTCG TTATCAAACC AATTTCCAAC CGAATTGCGC TAACTTTGGA GCATGTCGCC AATTGCGTAT GTTCTGTGCA CAAAACGGAT TCGCAATCCA AAATGGAGTA A
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Protein sequence | MVVEQKQSAQ KVASSAQAQA VLQSTKDLQN GTQKDLQVEV LRIIAMLMIV ACHMIIHLNI REHSFNMELL PAPGLRSALK FLVVQYGQVG VSTFFIISGY FLCRKTFRYR RVFAAWAQMF FYCIIVLAVT FVADCFGLLP ENLSNLLHGK ELVYTLLWNV TPFTYRSYWF MSAYLIMLMF MPFINILISH MTQRNHAMLL VLLASISLIP LYFGKNYTWN DIIYAIFGYL AGAFIAQYGS GIKKLTTKRL CACVAISTVL MLAFDYVASS GNKFVRVLTW DQQVHSGIGI LPMIIAMCIF ILVHRINMLR IKGLARTVIL RVSKATFGVY LLHEHMFIFI ALWTFVAWML PTTSSSALIV LLYAITLICT YAALSVVAVV IDLVIKPISN RIALTLEHVA NCVCSVHKTD SQSKME
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