| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1105 |
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| Symbol | murF |
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| ID | 8709961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1271237 |
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| End bp | 1272847 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646483196 |
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| Product | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase |
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| Protein accession | YP_003374306 |
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| Protein GI | 283783552 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.933873 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCTAATT TGGAGGATGT TATGAGTTGT GTTGAAACTT CGTGTGCCAG CAATGCTGAG
AGTTTAGATC ATGCCGATAT GATGCCTATG AGCATAAGCG AAATTGCTAA AGCTGTTCAT
GGGGAAATAC ACGAGTTTAA TAGTTGTGAC ACAGATTTAG TTGCAAATTC CGTTTTTAGT
GATTCTCGTC AAATCCGTAA CGGTTCTGTG TTCGTAGCTA TAGTTGGTGA ACATGTTGAC
GGTCATGATT ATGTAAAGAA TGCTGAAAAA TCTGGAGCTG TTGTAGCTAT TGTTGAACAT
GTTGTCGAAG GCACTAATCT CAATCAAATA GTTGTGAATA ATTCTATAGA AGCGCTGGGC
TTGCTAGCTA AACATAATTT GGAACTTCGT CGCAATCTTA ACAAACCTTT CACTATTATT
GGTATTACTG GTTCCGTTGG TAAAACAACA ACGAAAGATA TGTTGAAGGC TTTGTTGAGC
ACGCTAGGCG AAACAGTTGC TCCTGTTGGA TCTTTTAATA ATAATATTGG TTTGCCTCTT
ACTGCTTTGC AAGTTGGCAG TAATACTCGA TTTTTAATAG CAGAAATGGG AGCTAATCAT
GTTGGCGAAA TTGCCAATTT AACTCATATT GCTCCTCCGG ATCTCGCAAT AGTGCTTAAA
GTTGGTGTGG CTCATTTAGG TGAATTTGGC TCAGTTGAGC GCATTGCGCA AGCAAAAAGT
GAGATTGTGC GTGGGCTTTT GCCACATGGC ATAGCAGTAT TAAATTCCGA CGATAAGCGA
GTTTCTGCAA TGTCTTGTCT TGTAGAAAAT AAGCATGTGC GCTGGTTCGG TAGAAATGTT
AAAAACGGAT TGCTGGAATC AGCTAGTAAA GATGACTACC AACTTTCAGC TAGTAATATA
AAGTTAGATT CTTTTGGTAA GGCAGTTTTT ACTACCACTG AACGTAGTAA TTCTTCTAAT
CTAATGAATC ATATTGAAGT GCATCTTGCT ATACAAGGCG AGCATAATGT TATGAATGCG
CTTGCAGCAG CAAATGTTGC TAGATATTTG GGAATGACTT TAGATGATAT TGCTTCTGTG
CTGTCTAAAG TTTCGCATAT TAGCCCGCAT CGCATGCAAT TGAGTACAGT TTCTAAGAAT
GACGAGAAAT TTACACTTAT TGATGATTCC TTTAATGCAA ATCCTGATTC TATGAAAGCA
GGAATCGATG GTTTGTGCGC TTATGAAAAT GATTCTTGTA GTGCATCTTC GAAACCTTTC
CGTATAGCGG TTCTTGGTTC TATGTTGGAG CTTGGCAGCA ACGAAGATGA ATTGCACACA
AATATTGGAG AATATGTGGC AAATTCGAGT GTCGATGCAG TTGTTGCTGT TGGTTCAAAA
ACGGACTCTG ACTTAGATAA ATTAGCTCAC TGTATTGCTC AAGGTGCACG TTCTTCTTGG
AATAATAAAC TACTTTCTTC TCACGATGCA GTCTACTTTG TGCACAGTGC GGATGAGGCT
GATGATATTG TTTGGAAAAT TGTGGCCGAG CATCCGAGTA GTGTTGTGTT ATTGAAAGGC
TCTCATGCTT CAGGCTTGAG TGTGCTTGCT GAATATTGGG CAAATATTTA A
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| Protein sequence | MANLEDVMSC VETSCASNAE SLDHADMMPM SISEIAKAVH GEIHEFNSCD TDLVANSVFS
DSRQIRNGSV FVAIVGEHVD GHDYVKNAEK SGAVVAIVEH VVEGTNLNQI VVNNSIEALG
LLAKHNLELR RNLNKPFTII GITGSVGKTT TKDMLKALLS TLGETVAPVG SFNNNIGLPL
TALQVGSNTR FLIAEMGANH VGEIANLTHI APPDLAIVLK VGVAHLGEFG SVERIAQAKS
EIVRGLLPHG IAVLNSDDKR VSAMSCLVEN KHVRWFGRNV KNGLLESASK DDYQLSASNI
KLDSFGKAVF TTTERSNSSN LMNHIEVHLA IQGEHNVMNA LAAANVARYL GMTLDDIASV
LSKVSHISPH RMQLSTVSKN DEKFTLIDDS FNANPDSMKA GIDGLCAYEN DSCSASSKPF
RIAVLGSMLE LGSNEDELHT NIGEYVANSS VDAVVAVGSK TDSDLDKLAH CIAQGARSSW
NNKLLSSHDA VYFVHSADEA DDIVWKIVAE HPSSVVLLKG SHASGLSVLA EYWANI
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