| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1086 |
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| Symbol | prfA |
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| ID | 8709783 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1243262 |
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| End bp | 1244359 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 646483178 |
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| Product | peptide chain release factor 1 |
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| Protein accession | YP_003374289 |
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| Protein GI | 283783535 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0216] Protein chain release factor A |
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| TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGAGT CAGTAGAGGA ACAATTCCCG GCAGCAGTTA CCGCGTTAGA AGAGTATCGC
GATATTGAAA GTCGTATGGG AAGCCCGGAA GTTGCGTCAA ATCCGGATGC TATTCGTAAG
CTCGGTCGTA GGCACGCAGA ACTTGGATCA ATCGTAAACG CTTACCTAAA TTACAAACAG
CTTTGCGACG ACTTTGAAGC CGCAAACGAA ATGGCAAGCG ACGACCCAGA TTTTGCTGAA
GAAGCTAAGC GCTTAGAAGA GCAGATTCCA GCAGCAAAAG AAAAGCTTCG CACTGCATTA
ATTCCTAGGG ATCCGGATGA TGCGCGCGAT ATGATTATGG AAATTAAAGC TGGCACAGGC
GGCGAAGAAG CGGCTTTGTT TGCTGGCGAT TTATTGCGTA TGTACATGCG TTACGCGGAA
AAGCGCGGAT GGACTACCGT AATCCAAAGC GAAAATTCAA CGGAACTTGG CGGCGTAAAA
GACGTGCAGC TTGCGATTCG AGCAAAAGGT ACGCCTGCTC CAGAAGATGG CGTGTGGGCA
AGCATGAAGT ATGAGGGCGG AGTGCATCGC GTGCAGCGAA TCCCAGTTAC GGAATCGCAG
GGACGTATTC AAACTTCCGC AGCTGGCGTA ATCGTGTTCC CAGAAGCAGA CGAAGATGAC
GACGAAATCG AAATCGATCC AAAAGATTTG AAGATCGACA TTTTCATGAG CTCCGGCCCT
GGTGGACAGT CCGTGAACAC TACTTATTCC GCGGTCCGCA TGACGCATAT TCCAACCGGA
ATTGTTGTTA GCATGCAAGA CGAAAAATCG CAGATTCAAA ACCGTGCGGC AGCCCTTCGC
GTGTTAAAGT CTCGTTTGCT TGCCATGAAG CACGAGCAGG AGGCAGCAGA AGCGGCGGAT
ATGCGCCACT CACAGGTGCG TTCACTCGAC CGCTCTGAGC GAATCCGCAC GTACAATTTC
CCAGAAAATC GTATTGTGGA TCATCGCACG AATTACAAGG CTTACAATCT TGATCAGGTT
CTTGACGGCG ATTTGCAGCC TGTTATCGAC AGTGATATTC AGGCGGATGA AGCTGACCGC
TTAGCGCAAG CCAAGTAA
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| Protein sequence | MAESVEEQFP AAVTALEEYR DIESRMGSPE VASNPDAIRK LGRRHAELGS IVNAYLNYKQ
LCDDFEAANE MASDDPDFAE EAKRLEEQIP AAKEKLRTAL IPRDPDDARD MIMEIKAGTG
GEEAALFAGD LLRMYMRYAE KRGWTTVIQS ENSTELGGVK DVQLAIRAKG TPAPEDGVWA
SMKYEGGVHR VQRIPVTESQ GRIQTSAAGV IVFPEADEDD DEIEIDPKDL KIDIFMSSGP
GGQSVNTTYS AVRMTHIPTG IVVSMQDEKS QIQNRAAALR VLKSRLLAMK HEQEAAEAAD
MRHSQVRSLD RSERIRTYNF PENRIVDHRT NYKAYNLDQV LDGDLQPVID SDIQADEADR
LAQAK
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