Gene HMPREF0424_1076 details

Gene Information

• Locus tag: HMPREF0424_1076
• ID: 8709813
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: +
• Start bp: 1231192
• End bp: 1231677
• Gene Length: 486 bp
• Protein Length: 161 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 646483168
• Product: single-strand binding family protein
• Protein accession: YP_003374279
• Protein GI: 283783525
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0629] Single-stranded DNA-binding protein
• TIGRFAM ID: [TIGR00621] single stranded DNA-binding protein (ssb)

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACACAAC AACAGTCGAC CGTGACTATT AGTGGATACG TAGGCGCTGA GCCTGTAAAC 
TTTGGGCGAA GTGAAAATTC TCCGGCTTGT TCGCTACGAA TCGCGAGCAC GCAATCATAT 
TACCGCAACG ACGAACAGCA ATGGCATGAG CGTCCAACTA CTTGGATGAC TGTGAAAGCG 
TATAGGACTT TGGCTTCAAA CGTGCTAAAA AGCGTTCATA AAGGCGATGC AATCGTTGTA 
TATGGCAATT TGAGTACAGA AAACTGGACG AAAGATGGAA ACGATTATAA TCGCGTAATT 
TTGGAAGCTT CTGCTATTGG TCACGATTTA AATCGTGGAA CTACGCAATT TACAAAGCGA 
AACGCTGAAA CTGCTAAAAA TGGGCAGACG AAAGACAGCA ATCAGTCACA AAACGAGAAA 
ATAGAACGTA CTGACTCTCA CTCAGACAGC ACGGACGACG AATATGGAGG TGATGCTGAT 
ATCTAA 

 

Protein sequence

MTQQQSTVTI SGYVGAEPVN FGRSENSPAC SLRIASTQSY YRNDEQQWHE RPTTWMTVKA 
YRTLASNVLK SVHKGDAIVV YGNLSTENWT KDGNDYNRVI LEASAIGHDL NRGTTQFTKR 
NAETAKNGQT KDSNQSQNEK IERTDSHSDS TDDEYGGDAD I