| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1056 |
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| Symbol | |
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| ID | 8709748 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1202454 |
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| End bp | 1203338 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646483148 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_003374259 |
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| Protein GI | 283783505 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.247507 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGCAATA TGTCTAAAAA AAGTATCAAA GTAAAATCTA CTTTATGTAA GCGCGTATGG
AATGCTACTT TCGGTAAATT TGTGTGTTTA ACGTTTGCAA TATGGTTTTT TGTTGCTTTG
CTTTCGCTTT TATGGACTCC GTACTCACTT TTAGAAACTA ACGGTTTTAA AGTATGGCAG
AAGCCGTCTT TTTCGCATTG GCTTGGCACG GACGGCACTG GTTCGGATAT GCTTAGTTGG
CTTATGGCAG GTTCAAGAAT TGAGCTGATT CTCGTTTTTT CTACTGTTCT AGTTGCTGCT
TGTGTTGGGT TTGTTGTTTT GAGCTTTATG ATTTCTAGTT CACAAATGGT TCGCACAATA
AGCATTATGT CTGTTGACGC ATTGATTTCT ATTCCAACTG TTTTAATTGC GCTTATGCTT
GCAGTTCCGT TTGGAGCTAG TGTTGTTGTG ATTGTTATTG CTTGTGGAAC TGGCTATGGC
TTGAATTTAG CACGTATTGT ACGGCCGAGT GCGCAGCTTG CGTTGCAATC TGATTATGTG
ACTTCAGCTG TTTTGCAAGG TTCATCGCGT AAATATGTTC TTATTCATCA TGTTTTACCA
AATATTATTC CTGTTGCATT TGTTGAGCTT TCTCTTTCTG CAGGAACTGT TATTTTGGCT
GAAAGTGGCT TAACATACTT GGGTATTGGA GTTCCTGCTG GAGTTCCCAG CTGGGGGCGC
GTGTTGGCTA CTTCTGTTTC GTTAATTCAC GTAAATCCTT TATCGGTTGT CTGGCCAGGT
TTGATTGTGA CTGTAGTTGT TGTTGCTCTT AATCTTTTTG GTGACGTATT GCGCAAAGTT
TTAGATCCTT CATCAAAAAG TGCGAATAAA GTAGGGGAAA AATGA
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| Protein sequence | MCNMSKKSIK VKSTLCKRVW NATFGKFVCL TFAIWFFVAL LSLLWTPYSL LETNGFKVWQ
KPSFSHWLGT DGTGSDMLSW LMAGSRIELI LVFSTVLVAA CVGFVVLSFM ISSSQMVRTI
SIMSVDALIS IPTVLIALML AVPFGASVVV IVIACGTGYG LNLARIVRPS AQLALQSDYV
TSAVLQGSSR KYVLIHHVLP NIIPVAFVEL SLSAGTVILA ESGLTYLGIG VPAGVPSWGR
VLATSVSLIH VNPLSVVWPG LIVTVVVVAL NLFGDVLRKV LDPSSKSANK VGEK
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