Gene HMPREF0424_0971 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0971 
Symbol 
ID8709649 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp1107971 
End bp1108639 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content45% 
IMG OID646483066 
Producthypothetical protein 
Protein accessionYP_003374181 
Protein GI283783427 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.447 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGCAG TACAAGCTAA ATTAACGGAC TATGATGGAT TTGTTGAAAA ATTCAAGCCT 
AAACTAACCA CAGACGACTG TTACACGCCG CCGCAAATCT ATGAGATTAT TAAGAATTGG 
GCGGTTGAAA GATACGGTTT GCAGGGGCGT ACTATTTTGC GACCTTTTAA GCCCGGTGGT 
GACTATGAGG CGGAAGAGTA TCCGGAAGGT TGTGTGGTTA TTGATAATCC GCCGTTTAGT 
ATTCTGAGGA AGATTAAAGA TTTTTATATC ACGCATCATG TTGATTTTGT GCTTTTCGCG 
CCAACGCTCA CGCTTTTCAG CTCAACGGAT AATGTTGTAA ACTACATACA AGTCAACATG 
CCTATCCGGT ACCATAATGG CGCAGTCGTG AACACTAGCC TTGTGACTAA TTTAGGCGAT 
AATCTCGTTG AGACCGCGCC AGACTTAAGA CGCAAAATCG TAGAGACTCA GAAAAAGTCG 
GGCGTTAAGT TTAACACCGT TGCAAAATAC GTGTACCCCG AGCATGTAAT ATCCTCCGCG 
CTACTCAATA AGTATGTGAA GCACGTGCAG CCGTTCGTAT TAAAGCGCAG TGAAGCGCTC 
TTTGTGAGAG CACTAGACTC GCAGCGCGCA GCCAAGAAAA GCATTTATGG GGGGGGGGTA 
TCTCATTAG
 
Protein sequence
MNAVQAKLTD YDGFVEKFKP KLTTDDCYTP PQIYEIIKNW AVERYGLQGR TILRPFKPGG 
DYEAEEYPEG CVVIDNPPFS ILRKIKDFYI THHVDFVLFA PTLTLFSSTD NVVNYIQVNM 
PIRYHNGAVV NTSLVTNLGD NLVETAPDLR RKIVETQKKS GVKFNTVAKY VYPEHVISSA 
LLNKYVKHVQ PFVLKRSEAL FVRALDSQRA AKKSIYGGGV SH