| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0954 |
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| Symbol | lysP |
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| ID | 8709734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1095933 |
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| End bp | 1097423 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646483050 |
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| Product | lysine-specific permease |
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| Protein accession | YP_003374165 |
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| Protein GI | 283783411 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0833] Amino acid transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAGCT CATTATCATC TACTGCTGTA CAGAATACTC AGCAGAATAC TCAGCAAAAT
AACGATGTCC ATAGAGGATT AAAAACCCGC CATATTTCCA TGATTGCTTT AGGTGGCAGC
ATTGGCACCG GCTTATTCGT TGCTAGTGGT GCAACAATCC ATATGGCTGG TCCTGGCGGC
GCTTTGCTCG CTTATGGTGC GATTGGCATT ATGGTCTACT TCCTTATGAC TTCCCTTGGT
GAAATGGCCA CTTTTATGCC TATTAGTGGA TCGTTTGCAT CGTATTCTGG ACGTTTTATT
GATCCTGCAC TCGGTTTCGC AATGGGCTGG AACTATTGGT TTAATTGGGC TATTACGGTT
GCGGTAGACG TTAGTACTGC AGCAATAGTT CTGCAATACT GGTTCCCAAC AGTGCCAATA
TGGATTTTCT CACTGTCGGT TCTTATGCTT ATTTTGATTA TCAATGTGCT TACAGTTAAG
TGCTTTGGAG AAACTGAGTA TTGGCTTTCT ATTATTAAAG TGTTGGCAGT AATCGTATTC
CTTGTTATCG GTTCGCTTAC GATTGTTGGC ATTGTTGGTG GCAAAGCGCC ATTCTTGCAA
AACTTCACTC ATAAGGACGC TCCATTTGCA GGCGGTGTTC CTGCAGTGTT GTGTGCGTTC
GCTATTGCAG GCTTCTCTTT CCAAGGAACT GAGCTTATTG GTATTACTGC TGGAGAGTCT
GCAACTCCTG AAAAGAGTAT TCCAAAAGCT GTAAAGCAAG TGTTCTGGCG TATTCTTCTC
TTCTACATTC TTGCAATTTT CGTTATTGCT TGCATTATTC CTTATACTGA CAAGAACTTA
CTTGGTTCTG ATGTAACTGA TATTGCTATT AGTCCGTTTA CGCTTGTGTT CCAACGTGCA
GGGCTTGCAG CTGCAGCGGC AGTTATGAAT GCAGTGATTC TGACTTCTGT TATTTCTGCA
GCAAATTCCG GCATGTATGC TTCAACAAGA ATGCTTTATT CGCTCGCAAA AGAAGATAAT
GCTCCAAAAG TATTTGGCAA GGTAAGTCTT CGTGGTATTC CTGTTCCTGC GTTGATTGCT
ACATTTGTAG TTGCTTTATT TACTTTCTTT ATGAGTATTT TTGGTTCGCA AATTTACATG
TTCCTGGTTG CTGCAAGTGG TTTGACTGGT TTTATTGCTT GGGCTGGTAT TGCTGCAGCT
CATTATCGCT TCCGTAAAGC ATACTTGGCT CAAGGTCATT CCTTAGATGA ATTAGTTTAT
CGAGCAAAGT GGTATCCGTT TGGTCCTATT GTTGCGTTCT TCTTATGCAT TCTTGTTATT
GTTGGTCAGG ATTTGCATTC ATTTGCAACG CTTAACTGGC AGGCTATTGG AATCACGTAC
ATGTCCGTGC CGCTATTTAT CGTTCTATAC GTTGGTTATA AGATTAAAAA TCATACTCGA
GTAATTCCTC TTGAAGAAGT CGATTTAACT CATGTTCGAG TAGCAAAATG A
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| Protein sequence | MSSSLSSTAV QNTQQNTQQN NDVHRGLKTR HISMIALGGS IGTGLFVASG ATIHMAGPGG
ALLAYGAIGI MVYFLMTSLG EMATFMPISG SFASYSGRFI DPALGFAMGW NYWFNWAITV
AVDVSTAAIV LQYWFPTVPI WIFSLSVLML ILIINVLTVK CFGETEYWLS IIKVLAVIVF
LVIGSLTIVG IVGGKAPFLQ NFTHKDAPFA GGVPAVLCAF AIAGFSFQGT ELIGITAGES
ATPEKSIPKA VKQVFWRILL FYILAIFVIA CIIPYTDKNL LGSDVTDIAI SPFTLVFQRA
GLAAAAAVMN AVILTSVISA ANSGMYASTR MLYSLAKEDN APKVFGKVSL RGIPVPALIA
TFVVALFTFF MSIFGSQIYM FLVAASGLTG FIAWAGIAAA HYRFRKAYLA QGHSLDELVY
RAKWYPFGPI VAFFLCILVI VGQDLHSFAT LNWQAIGITY MSVPLFIVLY VGYKIKNHTR
VIPLEEVDLT HVRVAK
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