Gene HMPREF0424_0950 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0950 
Symbol 
ID8709202 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1093855 
End bp1094472 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content40% 
IMG OID646483047 
Productpeptidase, M23 family 
Protein accessionYP_003374163 
Protein GI283783409 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0739] Membrane proteins related to metalloendopeptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGTATTC GCAAAAATTA TGAATTATAT TACAAAATAT CTGCCTGTTT GGGGATTTTT 
ATAATCTCAG TTATTTTATT AGATACGCTG TTTTTACAAC CCGAAATTTC GCAAAATAGT 
CATCATCTTA AATATTATGT TGTAGAATCT GCTGTGACAT GTTGCCACAA GTGTGCTCTT 
TCTAAAGGCT CTTATAGCGA AAAAACATGC AAGTCAGCTA TGCAATGGCC TGTAAAACCT 
GCACGAATAG TAAAAGCTTT TAATCCTCCG CCTAAACCTT GGATGGCTGG GCATCGCGGC 
GTAGATTTAG CTGCAAGCAC AGGGACTCCT TTATTTGCGC CTGCAGATGG CGTTATTAGT 
TTTGCTGGTA AAGTCGCTGG TAAATCAGTT GTGACTATTA GGCATGGTGA ACTGACATCC 
ACTTTTGAGC CTGCTGTAAC AAAGTTTAGC GTTGGTGTTT TTGTGAAAAG AGGCCAGAAT 
TTTGCACATG TCGAAGGAGG TTCGGACCAT TGCGGCACAA CTTGTGTGCA GTGGGGTTTA 
AAACGTAAAA ATCGTACATA TGCTAATCCT GAAAGAATGA CTGTTAAGCG TCGCATTGTG 
CTTAAGCCTG TGGAATAA
 
Protein sequence
MCIRKNYELY YKISACLGIF IISVILLDTL FLQPEISQNS HHLKYYVVES AVTCCHKCAL 
SKGSYSEKTC KSAMQWPVKP ARIVKAFNPP PKPWMAGHRG VDLAASTGTP LFAPADGVIS 
FAGKVAGKSV VTIRHGELTS TFEPAVTKFS VGVFVKRGQN FAHVEGGSDH CGTTCVQWGL 
KRKNRTYANP ERMTVKRRIV LKPVE