Gene HMPREF0424_0931 details

Gene Information

• Locus tag: HMPREF0424_0931
• ID: 8709954
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: -
• Start bp: 1064361
• End bp: 1071290
• Gene Length: 6930 bp
• Protein Length: 2309 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 646483028
• Product: LPXTG-motif cell wall anchor domain protein
• Protein accession: YP_003374144
• Protein GI: 283783390
• COG category: [R] General function prediction only
• COG ID: [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 32
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATAAATT CAAATTCCGG AAAGCACGCA CGCAAGGTTA CATTGGATGC TGCAGTAAGT 
AACGCGATTG CGAAGGCTGT GGATGCTCGC AAGGTGGCGG CGTTTACGGT TGGCGCTGCA 
GGCGTGTTAG CTGGTGCGTC GTTCGCTTTT GGTGCAACTC CGGCAATGGC GGCGGAGGTG 
AGTGGTACTC CTGATACTAA GCCGGATGTA GCTCAGACGC CTGTGACTGC TGGTGAGAAT 
GCTGGGACTG GTAAGAAGGC TGAAGCTGGC GATAAGAATC AGACTGAAGC TAATAAAGAG 
GCTGGGTATA AGGCTGAGAA TACCAATAAG CAGGCTGAGC AGAAATCCGA GAATACTGTA 
AATACTGATG GTACTGAAAA TAAATCGACT GTTGTAAAGA TTCGTGGTAA GCGCTCGGTA 
GATAATCCGC CGTCTGGACA TACTGCGACT GTTCAAGATC GCGCTTCTGG TGGTTCAGCA 
GGTCAAGATC CTAATAAAAT TAATCCAGAC ACAACGGATA CCTCTAATAC CAAAATCGAT 
ATTAACGAGA ATAACGCTGA AACTATGCCA AATGCGTATG CTTGGGGAAG CTCAGACAAC 
ACGTATAGTG TAGATGGCGA AAAGCATACT GTTACTTTCC ACTTTGCAGC ACCAAAAGAT 
GGTAGCAAGA TTACCAGTAT TGCTATTTTC CCTGCTAGGA CAAATGGTTT CAATAATGCA 
AAAAGTGAGA AAGGTATTGA TTTTTACTCG AAAGATCAAA ACAAACACCA AGCTTATTCT 
GGTGAATATA CATTTACTCC TAATAACGAT GGATCTGCTG ATCTTAAGAT GACAACTCTT 
TTCAGAGATG GCAACCTTAA TGGCGGCGCT GAGAAGTATG TAGCCAGTCG CTCTATTTTC 
GTGTACGTAA CTAAAGATGG TAGTAGCACA GAAACTATTG CATATAAAAC AAACGTATTC 
CGCGCTGTAA CGCTTGTTCC GCCAAAGACT TCTGGCTCTG TGGTGCTTAA GTATAACCAA 
GAGCTTACTC CTGAAAAGGT TCAAGCAGCA ATTACTGAAG CTGGCAATGT TAATACTGAG 
CGTAGCGATA AAAAGTCGGT AAATGATCAG CTTTCTGGAG CGTTTACGCA AAATATTAAC 
GTAAAGTCTG ATGATGCTTA CGACAAGACT ACATTTAATG CTATTAATAC TGAAACCTCA 
GCTCAAGGCG CAACGGATAA GACTTACGTA GCTGGCGCGA AGACGCTTAA CACCTATATG 
GTTACGGATT TGGGCTTTAA GTCGCAAGCT ATTCCGCTTA CGGTTGCGCG CTATGATGAT 
CGTATTGACA AGCCGATTGT TGAAGATCCA ACTAATGTTT CGACTGAAGT TAAGGAAGAT 
ATTAAGAAGA AGCTTGCACA GCTTAACCAC ATTGCTCAAG ACAGGGTCAC CATTGACGAT 
AACGGCACAG TCACCATCAA CTTCGATGGT GTTGACGCTA AGGACGCTCC TAAGATTGCA 
CTCAGTGACC TTGTTTTGAA GCAGCTCAAG GAAGCGGATG TTAATGTTCC AACTGACGAT 
AAAGCAGTCT TTGTGGCTAA CCCACTCGAT TACTCCGATG CTGAGATTAA GAGTATTAAG 
AAGGCTATTT ACGAAGCTAA CAAGAACAAC GATAAGCTTG GTTTAAGCGA TACTGACTAC 
GAGAACCAGA TTTCGCTTTC TTACCTTACA GGCAATCTTA CTGCAACTGG TAGTGCAAAT 
ACTGGTATCT CGAACGGTCA GGCGGAAAAC AAGATTACCG TTAAGATCAA GACCGATAAG 
GCAGTTGCCG AGTTTAAGTC TGATGTAAAG GCGAGTAAGC TTACAAAGCT TCCAAACATT 
CGTACGGATT ACAACGTTTC GTGGACTGCA GACAAGATTG ATGGTCGTGA TACAGACGAG 
GGTCTTTCTT GGAGCGAAGA TAAGAAGACA ATTATCTACC GCTACGATCC AACGGCTGCG 
AAAGAGTTTG ATACAAATAA GATTCTTAAT TTGCTGAAAG CTAAGCCAAA GAATAGTAAT 
TCTGGTTTGC GCGATCTTAC AGGCGGCGAG GAACTTGACC ATGAAGGTGC TAGCGGAAAA 
CCGCAGAAGT CGCACGTGGG CTACGTGCTT AAAGGTGACC AGCCTACAAC TGAGTTGTCG 
CTCGGTAATA TGAGCGGTGC TTATTGGCAA TATAAGCAGA ATGTTTCGAA TTCTGGCGTG 
GACCTCGGCG ATGCAGAGTC GAATGCGGGA TCGTATTCCT GGGATGAAGA CGCTAAGCCT 
GTAGTAGTTG CTGCTAAACA AGACAAGGTA TATAAAGCGC GCCTGTTTGT TTTGCCGTAT 
GGAATGACGA TGTACAGAAA TATTTACATC GAAAATGGCA AAAACCCTGG CAACACCACG 
AAGGCAATTA ACGTTATCTT TGTGCCGCAG ACGAATCATA AGACAAGTGA TTTGAAGACG 
TCGGTTGGCA AGCACAAGAC TATTGCTGTT GAGGGCAAAG ATGTTCCTAC CGATTCTGCG 
TACTACAACG CGTCTGACAA GGTAAAGAGT GAATACGATG ATGCACTCAA AGTTGCTAAA 
GCTTTGTACG AGCAAGTTAA GGATAAAAAA GAGTCTGACC TTACTGAGAA GCAAAAAGCC 
GATATTGACA ATGCGACTAT TAAGTTAGAT AAGGCTCGCA AAGCCCTTGA TGGCACTAAG 
ACCGACAAGG CTGGATTGGA TAAGTCGATA ACCGAAGATG GTAAGCCTGC GCAAGGCCAA 
ACTCCTGCGT CTGGAACGCA AGCAACTGAC AGATATAAGA ACGTTACTGA ACCAGACTTT 
AAGAAGGCTG ATGGTTCTGA TGATACCGAC AGGAACAATG CAGCTAAAGA GGCTAAGAAG 
GCTTACGACA AGGCTCTTGA AGAAGCTAAG ACGTTAAATG CAGACGAAAA CGCCACGCAG 
AAGGCCGTTG ACGACGCGAA GGCGAAACTC GACGCTGCGC GCGAAAAGCT GAACGAATTT 
ACCACCAACA AAGATGAGTT GAATAATGCC ATCGCTCAGC ATGGTAAGGT AAACACGGGC 
GATGCGACTA AGCAAGGTGA CGAAAAACTC AAGACCGCCG ACCCAACCTA CCAAAACTCT 
ACTCCTGAGC AGCGCAAAGC TTACGACGAC GCTGTAGCGC AGGCAGACAA GGTTTCCAAG 
GATCCAAACG CTTCTCAAAA GGAAGTAAAC AAGGCTATTG ATGATCTTAA GAAGGCTAAA 
GCGGTTCTCG ACGCTAACGC AACCGACAAA GCTCCTTTGG ATGCTGCTGT GCAAAAGAGC 
TTCGATAACC CCGATCCAAA CGATGCCAGC AAACAAAGTG TCTTCTACAA GAACGCCGCT 
GCGAAGAAAG ACACCGACCC TGCTGCTAAA AAGGCTGTTG AGGACTACGA CAAAGCCCTA 
AAGAAAGCCA AGGAAGTTCT CGCAGACAAA AACGCCACCA AGAAAGACGT TGAGGACGCT 
AAGAAAGCGC TTGAAGACGC TGAAGCAGCA CTTCATGCTG ATACCTATCA AACAAAGAAG 
ACTGATCTTG CTCAAGCGCT TGCAGACAAC TTCAGTGGTT ATTTGATGCC AGCGTATTTC 
AATGCCTTTG ATAAGGCACA AGCTGAGGGC AAAGATTCTC AAGCTGCCAA GGACTTTAAA 
GCCTATAACG ATGCGTACCA CGCTGCAAAA GATTTGATGA ATGAGATTAA TAAGCCTAAT 
AGTACGGTAA CGCAAGACCA GGCTGATAAG GTTAAGAATC AGCTTATTGA AGCTCGTAAA 
CTCATAGATA CTTACGCAAC CGACACCAGT AGACTTTCGG CGGCTGCATT AAATGATATT 
GCCATACAAA ACAGCCCTGC ATACAAGAAT GTATCCGCAG ATGATGCGAG CGAAGAAGCA 
AAAGAAGCTA AAAAGAAGTA TGACGCCGCA GTAGATAAAC TGCACAAGGC GCTCAACAAC 
CAATTACCGA AAGATAAAGC AAACGGCCAG GATATTCCTG ATAGCAATAT CCCTGCGAAA 
GATGGCGACC TTAATAATAA GGACTACCTG AAAGATATTC AGGCGCACAA GAACGGTGAG 
CCGCTTAATA GGGATGTTGA CGCAATCATT AAGGAAATGA ACGACGCAGC TGCTGAGTTG 
AACAAGTTTG CAACCAAGAC CGATGAGCTG ATTAAGTCCA TTAACGAGGA CGTAACCACG 
CATCCAAGCC CAGCTTTTAA GAACGCCTCT CAGCCAAGCT ACAAAAACGA TGATGGTTCT 
GACAATACCG ACAAGAACAA TGCTGCTAAT AAAGCTGCTA GCGATTATGG TGAGGCTCTC 
AACAAGGCGA AAGACTTGCT CAAGAAACCT GATGCAACGC AGAAGGAAGT CAATGATGCG 
TTGAAGAAGC TTGACGACGC TCGCAAAGAG CTTGACAAGT ACAACACCGA CACCACCAAG 
CTTGCGGAAA GCGTAAAAAA GCACGGTTCT ACAGAGGGTC CTGCGCCTAC GGAAGGCACG 
CAAACTTCTG ATGCGTATCG TAATGCGTCT GATCCTCACT TCATGAAGGA GCAGGACGGC 
AAGCTTGTTC CGGATGATGA CAAGAACAAA AAGGCTGCCG AAGATAAGAA GGCGTATGAT 
GAAGCTTTAA CAAAAGCTCA GGAGCTTTTG AAGAAGCATG ATGATAAAGA CACGCCGCAA 
GATGCAAAGC CAACGCAAAA AGAAATCGAC GACGCGCTGA AGACCCTCGA TGAAGCTCGT 
AAGAAGCTTG AGGACAACTA TAAGACTGTT ACTACTGATC TTGAGAAAGA AATTAACAAG 
TCTACTCCGG AGGGTGCTCC TGCTGTTACT GAAGACGACT TCGAGAATAC GCCAGAGTTC 
AAGAATGCTA AAGCTAAGAC AAGCGATGGT AATGAAAATG CAGACGTTAC TGCTTACAAG 
ACAGCTCTTG CAAATGCTCG TAAGTTAGTA AGTGACGCAA ACGATGCAAG CAAGAAGAAC 
AGCGAGCGTC CAACGCAAAA GCAGATTAAC GAGGCGCTTG ACGCACTTAA AGCGGCTAAG 
AAGCAGATTG AAGACAACTA CAAGACCAAT CTTGAGCCGT TGACTTCTGC CAAAGACTTT 
GCAGGTGGTG ACTTCAAGAA GACACCTGAG TATCAAAATG CTGTTGCTAA GAAGGACGCT 
GGTGACCAAG GTGCCACACA AGCCTTAGGT GAAGATGGAA AAGACACAGG CTTTGACAAT 
ATTCTCAAGA AAGTTGCCGA AAAGCTTAAT GACGAAGATT GGAAGAAAAA AGCAACTCAA 
AAGCAAGTAA ACGCTCTGCT TAAACAGCTC CAAGACGCTC AAGAGAAGAT TGCAAAGGAT 
TATAAGACTG ATGCAATTAA GCTTGAAAAC GAAGTCGGCG ATAAAGATCA AGACGGCAAG 
CCTGTAACAC CTCCATTCGA GGCGTCGGTG GCGTACAAGA ACGCGCTTGA AAAAGCGAAG 
GCTGAGTCTA AAGAGGATGC CGACAAAGAC ACCTCTGCAA CTAAGAAGCT TGCTGCATAT 
GCCGAGAAGC TTGCTAAAGC AAACGAGCTT ATCGAAAAGG TCAAGAATCC TGATCCAAAC 
GCAAAGCCAG AAGATCGTCC AACTCAGAAG CAGGTTGATG ATGCTCTTGC GGCTTTGAAG 
CAGGCCAAGA AGGATATCGA CGACAACTTC AAGACCAAAG TTGATAAGCT CCAAAATGAA 
GTTGATGATA AAAATGAGGA TGGCACTGCG CGTACTCCAA AGTTTGAAGA ATCAACTGAG 
TTTGCAAACC TTCAAGGAAA GACTAAGGAT GGCAAAAAGC CTGATGACCT TGTAGCGTAT 
GAGCAAGCTT TGGCAAAGGC TAAGGAACTC ATCGACAAGA ACGATGGCAA AGTCAAGAAT 
GATCAAGGTC AAGAAGTTGA CGTTCCAAAG GATCAGCTCC CATCCCAGAA GGAAGTTGAC 
GAGGCTCTTA AGAATCTGAA GGAAATTAAG GATAAGATTA CTAAGAACTA CGTCACCAGC 
CCGCATGACT TGCAAGAAGA AGTTGATAAG TCAAAGGGCG GAGATACTGA CACCAGAACC 
GACGTGTTCG AGAATACTCC AGAGTTCAAG AATGCGACTG CTAAGGGTGA TGACGCTGCT 
AAGAAAGCTC TTGACGACTA TGACAAGAAG CTCAAGGCTG CCAAGGATCT TCTTGATAAG 
TTTGATCGCA CTACTGGAAA GCCAAAGACT GATCTTCCAG ATGGTACTAA AGTCCCAACT 
CAAAAGCAAC TTGACGATGC TCTAAAGGAT CTCCAAGCCG CCAAGAAGAA GATTGCCGAT 
GATTACAAGA CTGATCCTTC CAAGCTGAAA ACAGAAGCAG ATGCTGATGC TAAGTTCCGT 
GATTCTGTAT TCTTTATGAT TGGAATGACT GAGGATATTG ACGCCTATAA CAAGGCTTTG 
GCTGAGGCTA ACAGTGTGCT TAAGGATCCG AATGCTACTC AGGCTGAGGT TGACGCGGCT 
TTGAAGAAGC TTCAGGCGGC TAAGTATAAG ATTAATCACC CGTTTGGCAT AGGCAGTGGT 
GTTGGAAGCG GTAGCGGCTA TGATGCTGAT GCTAGTGATT CTCAGAGTGC TTCGGTTGAT 
AAGACTGCTT TGAGAGTTGA GGTTAATAAT TCTGAAGCAG ATTCTTCTGC TGCGTCTAAG 
GCGAATACTG CTGCTGCTAG AGCTTACGTG AAGGCTTTGG CTGAGGCTAA GCGTGTGCTT 
GCTGATAAGA ATGCTACTCA GGCTCAGGTT GATGCCGCTT TGAGGAATCT TAAGGCTGCT 
AAGGCTGCGT TGCGTAATGC TTCCGGTAAT GCTGGTGGTC TTGCTAAGAC GGGTGCTGCG 
ACTGGCTTGT TTGCAAGTCT TGCTGCAATC TTCTCCGGTC TTGGTGCTGC TGGCGTAGCT 
TCTCGCCGTC GTAAGCACTC TAACGAGTAG 

 

Protein sequence

MINSNSGKHA RKVTLDAAVS NAIAKAVDAR KVAAFTVGAA GVLAGASFAF GATPAMAAEV 
SGTPDTKPDV AQTPVTAGEN AGTGKKAEAG DKNQTEANKE AGYKAENTNK QAEQKSENTV 
NTDGTENKST VVKIRGKRSV DNPPSGHTAT VQDRASGGSA GQDPNKINPD TTDTSNTKID 
INENNAETMP NAYAWGSSDN TYSVDGEKHT VTFHFAAPKD GSKITSIAIF PARTNGFNNA 
KSEKGIDFYS KDQNKHQAYS GEYTFTPNND GSADLKMTTL FRDGNLNGGA EKYVASRSIF 
VYVTKDGSST ETIAYKTNVF RAVTLVPPKT SGSVVLKYNQ ELTPEKVQAA ITEAGNVNTE 
RSDKKSVNDQ LSGAFTQNIN VKSDDAYDKT TFNAINTETS AQGATDKTYV AGAKTLNTYM 
VTDLGFKSQA IPLTVARYDD RIDKPIVEDP TNVSTEVKED IKKKLAQLNH IAQDRVTIDD 
NGTVTINFDG VDAKDAPKIA LSDLVLKQLK EADVNVPTDD KAVFVANPLD YSDAEIKSIK 
KAIYEANKNN DKLGLSDTDY ENQISLSYLT GNLTATGSAN TGISNGQAEN KITVKIKTDK 
AVAEFKSDVK ASKLTKLPNI RTDYNVSWTA DKIDGRDTDE GLSWSEDKKT IIYRYDPTAA 
KEFDTNKILN LLKAKPKNSN SGLRDLTGGE ELDHEGASGK PQKSHVGYVL KGDQPTTELS 
LGNMSGAYWQ YKQNVSNSGV DLGDAESNAG SYSWDEDAKP VVVAAKQDKV YKARLFVLPY 
GMTMYRNIYI ENGKNPGNTT KAINVIFVPQ TNHKTSDLKT SVGKHKTIAV EGKDVPTDSA 
YYNASDKVKS EYDDALKVAK ALYEQVKDKK ESDLTEKQKA DIDNATIKLD KARKALDGTK 
TDKAGLDKSI TEDGKPAQGQ TPASGTQATD RYKNVTEPDF KKADGSDDTD RNNAAKEAKK 
AYDKALEEAK TLNADENATQ KAVDDAKAKL DAAREKLNEF TTNKDELNNA IAQHGKVNTG 
DATKQGDEKL KTADPTYQNS TPEQRKAYDD AVAQADKVSK DPNASQKEVN KAIDDLKKAK 
AVLDANATDK APLDAAVQKS FDNPDPNDAS KQSVFYKNAA AKKDTDPAAK KAVEDYDKAL 
KKAKEVLADK NATKKDVEDA KKALEDAEAA LHADTYQTKK TDLAQALADN FSGYLMPAYF 
NAFDKAQAEG KDSQAAKDFK AYNDAYHAAK DLMNEINKPN STVTQDQADK VKNQLIEARK 
LIDTYATDTS RLSAAALNDI AIQNSPAYKN VSADDASEEA KEAKKKYDAA VDKLHKALNN 
QLPKDKANGQ DIPDSNIPAK DGDLNNKDYL KDIQAHKNGE PLNRDVDAII KEMNDAAAEL 
NKFATKTDEL IKSINEDVTT HPSPAFKNAS QPSYKNDDGS DNTDKNNAAN KAASDYGEAL 
NKAKDLLKKP DATQKEVNDA LKKLDDARKE LDKYNTDTTK LAESVKKHGS TEGPAPTEGT 
QTSDAYRNAS DPHFMKEQDG KLVPDDDKNK KAAEDKKAYD EALTKAQELL KKHDDKDTPQ 
DAKPTQKEID DALKTLDEAR KKLEDNYKTV TTDLEKEINK STPEGAPAVT EDDFENTPEF 
KNAKAKTSDG NENADVTAYK TALANARKLV SDANDASKKN SERPTQKQIN EALDALKAAK 
KQIEDNYKTN LEPLTSAKDF AGGDFKKTPE YQNAVAKKDA GDQGATQALG EDGKDTGFDN 
ILKKVAEKLN DEDWKKKATQ KQVNALLKQL QDAQEKIAKD YKTDAIKLEN EVGDKDQDGK 
PVTPPFEASV AYKNALEKAK AESKEDADKD TSATKKLAAY AEKLAKANEL IEKVKNPDPN 
AKPEDRPTQK QVDDALAALK QAKKDIDDNF KTKVDKLQNE VDDKNEDGTA RTPKFEESTE 
FANLQGKTKD GKKPDDLVAY EQALAKAKEL IDKNDGKVKN DQGQEVDVPK DQLPSQKEVD 
EALKNLKEIK DKITKNYVTS PHDLQEEVDK SKGGDTDTRT DVFENTPEFK NATAKGDDAA 
KKALDDYDKK LKAAKDLLDK FDRTTGKPKT DLPDGTKVPT QKQLDDALKD LQAAKKKIAD 
DYKTDPSKLK TEADADAKFR DSVFFMIGMT EDIDAYNKAL AEANSVLKDP NATQAEVDAA 
LKKLQAAKYK INHPFGIGSG VGSGSGYDAD ASDSQSASVD KTALRVEVNN SEADSSAASK 
ANTAAARAYV KALAEAKRVL ADKNATQAQV DAALRNLKAA KAALRNASGN AGGLAKTGAA 
TGLFASLAAI FSGLGAAGVA SRRRKHSNE