| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0918 |
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| Symbol | carA |
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| ID | 8709157 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1050511 |
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| End bp | 1051722 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646483016 |
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| Product | carbamoyl-phosphate synthase, small subunit |
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| Protein accession | YP_003374132 |
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| Protein GI | 283783378 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0505] Carbamoylphosphate synthase small subunit |
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| TIGRFAM ID | [TIGR01368] carbamoyl-phosphate synthase, small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATTACA ACGACACCTT TGCCGGATTC GGCAGTGATG ATGCAGTATT GGTGTTGGAG
GATGGTCAGG TTTACGTTGG TAAGCCTTTC GGTGCGCAAG GTTCTACGCG CGCTGAGATT
GTGTTCTCCA CGGGCATGAC TGGTTATCAA GAAACATTAA CTGATCCAAG TTATGATCAA
CAAATCGTAG TTCAAACATT CCCACATATA GGTAATACGG GAATGAATCA TGAAGATCCA
GAATCTGCCC ACATTTGGGT TGCAGGTTAT GTGGTTAAGG AGCCGAGCCC AGTAGTTAGC
AATTGGCGAG CTGAAGGTTC CTTGGAAGAC GATTTACAAA AGCAAGGTAT CGTTGGCATT
AGTGGTATTG ATACTCGAAA GCTGGTACGT CATTTACGCT CGGTAGGCGT TATGCGTGCC
GGCATTTTTT CTAATAAGGC CCTGGTTGAT CCGTCAACCG GGGCTTTTCG TACCGTTGCT
TCTTTCGTTG ACGAAATTAA GCAAACTCCT CAAATGCAGG GCTTGCGCTT AACGGATGAA
GTCAGTACTA AAGAGACATA CACGATTGAG CCTTGCGGTG ATTTTGAAGG AAAAGATCCG
CTTTACACGG TTGTAGCAGT TGACTTTGGT ATTAAATCTA TGACTCCTCA CCGTTTGGCT
GAGCGCGGCT GCCGCGTGCA TGTCGTAAGC TCCTCAATAA GCTTCGAATC GCTGCAAGCT
CTTAACGTGG ACGGCGTATT CTTCTCGAAT GGTCCTGGAG ATCCTGGCCA AGCAAATCGC
GAAGTTGATC TTTTGCGCAA AGTTTTGGAT GCAGGATACC CGTTCTTTGG TATCTGCTTT
GGAAACCAGT TGCTTGGTCG CGCGCTCGGC TTTGGCACTT ACAAGCTGAA GTTTGGTCAC
CGCGGTATTA ATCAGCCTGT AAAAGACGTT ACAACCGGAA AAGTGGAAGT TACAGCTCAT
AATCACGGCT TTGCAGTGGA CGCTCCTCTT GACGGTCCTG TCCAATCTCC TTATGGAAAC
GGTCACTTTG GTCGCGTGCT AGTTTCGCAT ATTGACTTGA ACGACAATGT TGTAGAAGGC
TTACAATGCC TTGATATTCC AGCGTTCTCA GTGCAATATC ATCCGGAAGC TGCAGCAGGC
CCGCACGATG CTTCCTATCT ATTTGACCGT TTTGTGCAAT TGATGCGCGA AAACACTCGA
AAAAGCAAGT AA
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| Protein sequence | MDYNDTFAGF GSDDAVLVLE DGQVYVGKPF GAQGSTRAEI VFSTGMTGYQ ETLTDPSYDQ
QIVVQTFPHI GNTGMNHEDP ESAHIWVAGY VVKEPSPVVS NWRAEGSLED DLQKQGIVGI
SGIDTRKLVR HLRSVGVMRA GIFSNKALVD PSTGAFRTVA SFVDEIKQTP QMQGLRLTDE
VSTKETYTIE PCGDFEGKDP LYTVVAVDFG IKSMTPHRLA ERGCRVHVVS SSISFESLQA
LNVDGVFFSN GPGDPGQANR EVDLLRKVLD AGYPFFGICF GNQLLGRALG FGTYKLKFGH
RGINQPVKDV TTGKVEVTAH NHGFAVDAPL DGPVQSPYGN GHFGRVLVSH IDLNDNVVEG
LQCLDIPAFS VQYHPEAAAG PHDASYLFDR FVQLMRENTR KSK
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