| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0901 |
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| Symbol | hrcA |
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| ID | 8709919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1026647 |
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| End bp | 1027684 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482999 |
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| Product | heat-inducible transcription repressor HrcA |
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| Protein accession | YP_003374115 |
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| Protein GI | 283783361 |
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| COG category | [K] Transcription |
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| COG ID | [COG1420] Transcriptional regulator of heat shock gene |
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| TIGRFAM ID | [TIGR00331] heat shock gene repressor HrcA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTAATGC AGTCACGACG CATGATGATT TTGCGCGCAG TTGTTGAGGA TTATATTCGT
TCTCAAGAGC CTGTTGGTTC TGCGGCTCTT GCAAAGCATC ATCAGCTTGG TGTGAGTTCA
GCTACTATTC GTAACGATAT GTCGGCTTTG GAAGAAGAGG GATACCTTGT TCAACCGCAC
ACTTCTGCAG GTCGTATTCC TACTGAAAAA GGCTATCGCT ACTTTGTTGA CGGTTTGGCT
TCTGTTATTC CGCTTTCTGA ACTGCAGCGT CGCGCTATAC GTAACTTTTT AAGCGGATCT
GTTAGTTTGA AAGATACTTT GCAACGTTCC GCACGTCTTC TTGCAAGTAT TACGGGTCAA
GTCGCGCTCG TAGCATCTCC AGCATTGTCT AAGTCAAAAG TAAAAAGAAT TGAGATTGTT
CAAGTATCGT CTTCTACGCT TTTGGTTGTT GTGATTACAG ATGCTGGAGG CGTAGCTCAG
CACATGATTC AAGCAACTAC TATAAATTCA GATGACTTAT TGCATCTAAC TAATATGGTT
AATGAGTGCT GCATTGGGCT ATCTCTTTCA TCTGCTTCAC AACGCGTTTA TGCGCTCGCA
AATCGCAAGG ATTTAGCGTC AGCTTTGCAA ATTATTAGTC AACTTGCTAA CGCTTTAGAA
GATATGCATG ACGGTGAGCA TACTCACGAC TTATATATGG CTGGAGCTTC TCAACTTGCG
CATAGACAAA GTATTGTTGA TTTTGCTTCA CTTTTTGACG CACTCGAAGA ACAGGCTGTT
ATTATGCGAC TCATGACTTC TTTAAGTGAG GAAGCAAGCG ATTGTGCAAG TGGTGTTAGT
GTTGCAATCG GCTCGGAAAC GCACACTCCT GGTTTGCTTA ACGCTTCTGT TGTAACAAGC
ACTTACGGAT ACAATGCTGA TTCTGACTCT GCGTTTATTG GATCAATTGG TCCTACGCAT
ATGGATTATG CTGCAACGAT GACTGCTGTT AAGGCTGTTG CGCGCTACCT TAATTCGTTT
ATATCCGAAA ATTCATAA
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| Protein sequence | MVMQSRRMMI LRAVVEDYIR SQEPVGSAAL AKHHQLGVSS ATIRNDMSAL EEEGYLVQPH
TSAGRIPTEK GYRYFVDGLA SVIPLSELQR RAIRNFLSGS VSLKDTLQRS ARLLASITGQ
VALVASPALS KSKVKRIEIV QVSSSTLLVV VITDAGGVAQ HMIQATTINS DDLLHLTNMV
NECCIGLSLS SASQRVYALA NRKDLASALQ IISQLANALE DMHDGEHTHD LYMAGASQLA
HRQSIVDFAS LFDALEEQAV IMRLMTSLSE EASDCASGVS VAIGSETHTP GLLNASVVTS
TYGYNADSDS AFIGSIGPTH MDYAATMTAV KAVARYLNSF ISENS
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