Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0901 |
Symbol | hrcA |
ID | 8709919 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1026647 |
End bp | 1027684 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 646482999 |
Product | heat-inducible transcription repressor HrcA |
Protein accession | YP_003374115 |
Protein GI | 283783361 |
COG category | [K] Transcription |
COG ID | [COG1420] Transcriptional regulator of heat shock gene |
TIGRFAM ID | [TIGR00331] heat shock gene repressor HrcA |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGTAATGC AGTCACGACG CATGATGATT TTGCGCGCAG TTGTTGAGGA TTATATTCGT TCTCAAGAGC CTGTTGGTTC TGCGGCTCTT GCAAAGCATC ATCAGCTTGG TGTGAGTTCA GCTACTATTC GTAACGATAT GTCGGCTTTG GAAGAAGAGG GATACCTTGT TCAACCGCAC ACTTCTGCAG GTCGTATTCC TACTGAAAAA GGCTATCGCT ACTTTGTTGA CGGTTTGGCT TCTGTTATTC CGCTTTCTGA ACTGCAGCGT CGCGCTATAC GTAACTTTTT AAGCGGATCT GTTAGTTTGA AAGATACTTT GCAACGTTCC GCACGTCTTC TTGCAAGTAT TACGGGTCAA GTCGCGCTCG TAGCATCTCC AGCATTGTCT AAGTCAAAAG TAAAAAGAAT TGAGATTGTT CAAGTATCGT CTTCTACGCT TTTGGTTGTT GTGATTACAG ATGCTGGAGG CGTAGCTCAG CACATGATTC AAGCAACTAC TATAAATTCA GATGACTTAT TGCATCTAAC TAATATGGTT AATGAGTGCT GCATTGGGCT ATCTCTTTCA TCTGCTTCAC AACGCGTTTA TGCGCTCGCA AATCGCAAGG ATTTAGCGTC AGCTTTGCAA ATTATTAGTC AACTTGCTAA CGCTTTAGAA GATATGCATG ACGGTGAGCA TACTCACGAC TTATATATGG CTGGAGCTTC TCAACTTGCG CATAGACAAA GTATTGTTGA TTTTGCTTCA CTTTTTGACG CACTCGAAGA ACAGGCTGTT ATTATGCGAC TCATGACTTC TTTAAGTGAG GAAGCAAGCG ATTGTGCAAG TGGTGTTAGT GTTGCAATCG GCTCGGAAAC GCACACTCCT GGTTTGCTTA ACGCTTCTGT TGTAACAAGC ACTTACGGAT ACAATGCTGA TTCTGACTCT GCGTTTATTG GATCAATTGG TCCTACGCAT ATGGATTATG CTGCAACGAT GACTGCTGTT AAGGCTGTTG CGCGCTACCT TAATTCGTTT ATATCCGAAA ATTCATAA
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Protein sequence | MVMQSRRMMI LRAVVEDYIR SQEPVGSAAL AKHHQLGVSS ATIRNDMSAL EEEGYLVQPH TSAGRIPTEK GYRYFVDGLA SVIPLSELQR RAIRNFLSGS VSLKDTLQRS ARLLASITGQ VALVASPALS KSKVKRIEIV QVSSSTLLVV VITDAGGVAQ HMIQATTINS DDLLHLTNMV NECCIGLSLS SASQRVYALA NRKDLASALQ IISQLANALE DMHDGEHTHD LYMAGASQLA HRQSIVDFAS LFDALEEQAV IMRLMTSLSE EASDCASGVS VAIGSETHTP GLLNASVVTS TYGYNADSDS AFIGSIGPTH MDYAATMTAV KAVARYLNSF ISENS
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