Gene HMPREF0424_0886 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0886 
SymbolpflB 
ID8709879 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp1005477 
End bp1007852 
Gene Length2376 bp 
Protein Length791 aa 
Translation table11 
GC content48% 
IMG OID646482986 
Productformate C-acetyltransferase 
Protein accessionYP_003374102 
Protein GI283783348 
COG category[C] Energy production and conversion 
COG ID[COG1882] Pyruvate-formate lyase 
TIGRFAM ID[TIGR01255] formate acetyltransferase 1 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACATCAG TTGATGCGCC AGTTCTCAGT GAAGAGGATC TTCGTACCGA AGCGTGGAAT 
GGTTTTACTG ACGGCAATTG GAAGAAAGAC ATTGACGTAC GCGACTTTAT AATAAAGAAC
TATACGCCAT ATGAAGGTGA CGAAAGTTTC TTGGCAAATG CCACTGAAAA AACGAAGCAC
ATGTGGAAAT ATCTCGACGA CAACTACTTA GCTGTTGAAC GTGAGCGTCG TGTTTATGAT
GTTGAAACTC ATATCCCAGC AGGTATTGAC GCAATGCCAG CAGGCTACAT TGAAAGCCCA
GAAGTAGATA ACGTAATCGT CGGTTTGCAA ACTGATGAGC CTTGCAAGCG CGCTATGATG
CCAAACGGCG GTTGGCGCAT GGTTGAGCAA GCTATTAAAG AAGCTGGCAA GGAAGTAGAT
CCTCAAATCA AGAAGATTTT CACCGTCTAC CGTAAGACTC ATAACGATGG CGTGTTTGGC
GTTTACACCA AGAATATTAA GATTGCTCGC CACAACAAGA TTTTGACCGG TTTGCCAGAT
GCTTACGGCC GCGGTCGTAT TATTGGCGAT TATCGTCGTG TTGCTCTTTA CGGCGTGAAC
ATGCTTATTG AGTTTAAGAA GCGCGACAAG GATTCGATTC CATACCGTAA CGATTTTACC
GAGACCGAAA TTGAGCATTG GATTCGCTTC CGCGAAGAGC ATGACGAGCA GATTAAGGCT
TTGAAGCAGC TTATTAACTT GGGTAACGAG TACGGTTTGG ATTTGACTCG TCCAGCTAAG
ACCGCTAAGG AAGCTGTTCA GTGGACTTAC ATGGGCTATC TTGCTTCTGT TAAGAGCCAG
GATGGCGCTG CAATGAGCTT CGGTCGCGTT TCCGCATTCT TCGATTGCTA CTTTGAGCGC
GATTTGAAGG CAGGTTTAAT TAACGAAACC GACGCTCAGG AAATTATTGA CGCTCTTGTT
ATGAAGCTTC GTATTGTGCG CTTCTTGCGT ACTAAGGATT ACGACGCAAT CTTCTCTGGT
GATCCTTACT GGGCAACTTG GTCCGATGCA GGCTTCAGCG AGGATGGCCG CACTTTCGTA
ACCAAGACTT CGTTCCGTTT GCTCAACACT TTGACTCTTG AGCATTTGGG ACCTGGTCCT
GAGCCAAATA TCACTATTTT CTGGGATCCA AAGCTTCCAG AAGCTTATAA GCGTTTCTGC
GCACGAATTT CTATCGACAC TTCTGCAATC CAGTACGAGT CCGATAAAGA CATTCGTGAG
CACTGGGGTG ACGACGCTGC TATTGCTTGC TGCGTTTCTC CAATGCGCGT CGGTAAGCAA
ATGCAGTTCT TCGCAGCTCG CGTGAACTCT GCAAAAGCTT TGCTTTACGC TATTAACGGC
GGCCGCGATG AAATGACCGG CATGCAAGTT ATCGATAAGG GTGTTATTGA CCCAATCAAG
CCAGAAGCTG ACGGCACTCT CGACTACGAG AAGGTTAAGG CTAACTACGA GAAGGCTTTG
GAATGGCTTT CCGAGACTTA TATTGAGGCT TTGAATATCA TCCACTACAT GCACGATAAG
TACGCTTACG AGTCCATCGA AATGGCTTTG CATGATAGGG AAGTCTACCG TACGCTTGGT
TGCGGCATGT CCGGCTTGTC TATTGCTGCA GATTCCTTGG CTGCTTTGAA GTATGCAAAG
GTTTACCCAA TCTACAACAA GGATGCTAAG ACCACTGAAG GCCACGAGTA CGAGTACATC
GAGGGCGGCG ACGACGACTT AATCGTTGGC TACAAGACTG TTGGCGAGTT CCCAGTTTAC
GGTAACGACG ACGATCGTGC AGACGACTTA GCAAAGTGGG TTGTAAGCAC TGTTATGGGT
CAGGTAAAGC GTTTGCCTGT GTACCGTAAT GCTGTTCCAA CTCAGTCCAT CTTGACTATT
ACTTCTAACG TTGAGTATGG CAAGAACACT GGTTCCTTCC CATCCGGTCA CAAGAAGGGT
ACTCCGTACG CTCCAGGCGC AAACCCAGAA AACGGCATGG ATTCGCACGG TATGCTTCCT
TCGATGTTCT CCGTTGGAAA GATTGATTAC GATGATGCTC TTGACGGCAT TTCGCTTACG
AACACCATTA CTCCTGACGG TTTGGGTCGT GACGAAGACG AGCGCATCAG CAACTTGGTT
GGCATTTTGG ATGCTGGCAA CGGTCACGGC TTGTACCACG CAAACATCAA CGTGTTGCGT
AAGGAACAGC TTGAAGATGC TGTTGAGCAC CCAGAAAAGT ATCCGCATTT GACGGTTCGA
GTTTCCGGCT ACGCAGTGAA CTTCGTGAAG CTCACTAAGG AGCAGCAGCT CGACGTTATT
TCTCGTACAT TCCACCAGGG TTCAGTTACT GACTGA
 
Protein sequence
MTSVDAPVLS EEDLRTEAWN GFTDGNWKKD IDVRDFIIKN YTPYEGDESF LANATEKTKH 
MWKYLDDNYL AVERERRVYD VETHIPAGID AMPAGYIESP EVDNVIVGLQ TDEPCKRAMM
PNGGWRMVEQ AIKEAGKEVD PQIKKIFTVY RKTHNDGVFG VYTKNIKIAR HNKILTGLPD
AYGRGRIIGD YRRVALYGVN MLIEFKKRDK DSIPYRNDFT ETEIEHWIRF REEHDEQIKA
LKQLINLGNE YGLDLTRPAK TAKEAVQWTY MGYLASVKSQ DGAAMSFGRV SAFFDCYFER
DLKAGLINET DAQEIIDALV MKLRIVRFLR TKDYDAIFSG DPYWATWSDA GFSEDGRTFV
TKTSFRLLNT LTLEHLGPGP EPNITIFWDP KLPEAYKRFC ARISIDTSAI QYESDKDIRE
HWGDDAAIAC CVSPMRVGKQ MQFFAARVNS AKALLYAING GRDEMTGMQV IDKGVIDPIK
PEADGTLDYE KVKANYEKAL EWLSETYIEA LNIIHYMHDK YAYESIEMAL HDREVYRTLG
CGMSGLSIAA DSLAALKYAK VYPIYNKDAK TTEGHEYEYI EGGDDDLIVG YKTVGEFPVY
GNDDDRADDL AKWVVSTVMG QVKRLPVYRN AVPTQSILTI TSNVEYGKNT GSFPSGHKKG
TPYAPGANPE NGMDSHGMLP SMFSVGKIDY DDALDGISLT NTITPDGLGR DEDERISNLV
GILDAGNGHG LYHANINVLR KEQLEDAVEH PEKYPHLTVR VSGYAVNFVK LTKEQQLDVI
SRTFHQGSVT D