| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0886 |
|---|
| Symbol | pflB |
|---|
| ID | 8709879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 1005477 |
|---|
| End bp | 1007852 |
|---|
| Gene Length | 2376 bp |
|---|
| Protein Length | 791 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 646482986 |
|---|
| Product | formate C-acetyltransferase |
|---|
| Protein accession | YP_003374102 |
|---|
| Protein GI | 283783348 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1882] Pyruvate-formate lyase |
|---|
| TIGRFAM ID | [TIGR01255] formate acetyltransferase 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATCAG TTGATGCGCC AGTTCTCAGT GAAGAGGATC TTCGTACCGA AGCGTGGAAT
GGTTTTACTG ACGGCAATTG GAAGAAAGAC ATTGACGTAC GCGACTTTAT AATAAAGAAC
TATACGCCAT ATGAAGGTGA CGAAAGTTTC TTGGCAAATG CCACTGAAAA AACGAAGCAC
ATGTGGAAAT ATCTCGACGA CAACTACTTA GCTGTTGAAC GTGAGCGTCG TGTTTATGAT
GTTGAAACTC ATATCCCAGC AGGTATTGAC GCAATGCCAG CAGGCTACAT TGAAAGCCCA
GAAGTAGATA ACGTAATCGT CGGTTTGCAA ACTGATGAGC CTTGCAAGCG CGCTATGATG
CCAAACGGCG GTTGGCGCAT GGTTGAGCAA GCTATTAAAG AAGCTGGCAA GGAAGTAGAT
CCTCAAATCA AGAAGATTTT CACCGTCTAC CGTAAGACTC ATAACGATGG CGTGTTTGGC
GTTTACACCA AGAATATTAA GATTGCTCGC CACAACAAGA TTTTGACCGG TTTGCCAGAT
GCTTACGGCC GCGGTCGTAT TATTGGCGAT TATCGTCGTG TTGCTCTTTA CGGCGTGAAC
ATGCTTATTG AGTTTAAGAA GCGCGACAAG GATTCGATTC CATACCGTAA CGATTTTACC
GAGACCGAAA TTGAGCATTG GATTCGCTTC CGCGAAGAGC ATGACGAGCA GATTAAGGCT
TTGAAGCAGC TTATTAACTT GGGTAACGAG TACGGTTTGG ATTTGACTCG TCCAGCTAAG
ACCGCTAAGG AAGCTGTTCA GTGGACTTAC ATGGGCTATC TTGCTTCTGT TAAGAGCCAG
GATGGCGCTG CAATGAGCTT CGGTCGCGTT TCCGCATTCT TCGATTGCTA CTTTGAGCGC
GATTTGAAGG CAGGTTTAAT TAACGAAACC GACGCTCAGG AAATTATTGA CGCTCTTGTT
ATGAAGCTTC GTATTGTGCG CTTCTTGCGT ACTAAGGATT ACGACGCAAT CTTCTCTGGT
GATCCTTACT GGGCAACTTG GTCCGATGCA GGCTTCAGCG AGGATGGCCG CACTTTCGTA
ACCAAGACTT CGTTCCGTTT GCTCAACACT TTGACTCTTG AGCATTTGGG ACCTGGTCCT
GAGCCAAATA TCACTATTTT CTGGGATCCA AAGCTTCCAG AAGCTTATAA GCGTTTCTGC
GCACGAATTT CTATCGACAC TTCTGCAATC CAGTACGAGT CCGATAAAGA CATTCGTGAG
CACTGGGGTG ACGACGCTGC TATTGCTTGC TGCGTTTCTC CAATGCGCGT CGGTAAGCAA
ATGCAGTTCT TCGCAGCTCG CGTGAACTCT GCAAAAGCTT TGCTTTACGC TATTAACGGC
GGCCGCGATG AAATGACCGG CATGCAAGTT ATCGATAAGG GTGTTATTGA CCCAATCAAG
CCAGAAGCTG ACGGCACTCT CGACTACGAG AAGGTTAAGG CTAACTACGA GAAGGCTTTG
GAATGGCTTT CCGAGACTTA TATTGAGGCT TTGAATATCA TCCACTACAT GCACGATAAG
TACGCTTACG AGTCCATCGA AATGGCTTTG CATGATAGGG AAGTCTACCG TACGCTTGGT
TGCGGCATGT CCGGCTTGTC TATTGCTGCA GATTCCTTGG CTGCTTTGAA GTATGCAAAG
GTTTACCCAA TCTACAACAA GGATGCTAAG ACCACTGAAG GCCACGAGTA CGAGTACATC
GAGGGCGGCG ACGACGACTT AATCGTTGGC TACAAGACTG TTGGCGAGTT CCCAGTTTAC
GGTAACGACG ACGATCGTGC AGACGACTTA GCAAAGTGGG TTGTAAGCAC TGTTATGGGT
CAGGTAAAGC GTTTGCCTGT GTACCGTAAT GCTGTTCCAA CTCAGTCCAT CTTGACTATT
ACTTCTAACG TTGAGTATGG CAAGAACACT GGTTCCTTCC CATCCGGTCA CAAGAAGGGT
ACTCCGTACG CTCCAGGCGC AAACCCAGAA AACGGCATGG ATTCGCACGG TATGCTTCCT
TCGATGTTCT CCGTTGGAAA GATTGATTAC GATGATGCTC TTGACGGCAT TTCGCTTACG
AACACCATTA CTCCTGACGG TTTGGGTCGT GACGAAGACG AGCGCATCAG CAACTTGGTT
GGCATTTTGG ATGCTGGCAA CGGTCACGGC TTGTACCACG CAAACATCAA CGTGTTGCGT
AAGGAACAGC TTGAAGATGC TGTTGAGCAC CCAGAAAAGT ATCCGCATTT GACGGTTCGA
GTTTCCGGCT ACGCAGTGAA CTTCGTGAAG CTCACTAAGG AGCAGCAGCT CGACGTTATT
TCTCGTACAT TCCACCAGGG TTCAGTTACT GACTGA
|
|---|
| Protein sequence | MTSVDAPVLS EEDLRTEAWN GFTDGNWKKD IDVRDFIIKN YTPYEGDESF LANATEKTKH
MWKYLDDNYL AVERERRVYD VETHIPAGID AMPAGYIESP EVDNVIVGLQ TDEPCKRAMM
PNGGWRMVEQ AIKEAGKEVD PQIKKIFTVY RKTHNDGVFG VYTKNIKIAR HNKILTGLPD
AYGRGRIIGD YRRVALYGVN MLIEFKKRDK DSIPYRNDFT ETEIEHWIRF REEHDEQIKA
LKQLINLGNE YGLDLTRPAK TAKEAVQWTY MGYLASVKSQ DGAAMSFGRV SAFFDCYFER
DLKAGLINET DAQEIIDALV MKLRIVRFLR TKDYDAIFSG DPYWATWSDA GFSEDGRTFV
TKTSFRLLNT LTLEHLGPGP EPNITIFWDP KLPEAYKRFC ARISIDTSAI QYESDKDIRE
HWGDDAAIAC CVSPMRVGKQ MQFFAARVNS AKALLYAING GRDEMTGMQV IDKGVIDPIK
PEADGTLDYE KVKANYEKAL EWLSETYIEA LNIIHYMHDK YAYESIEMAL HDREVYRTLG
CGMSGLSIAA DSLAALKYAK VYPIYNKDAK TTEGHEYEYI EGGDDDLIVG YKTVGEFPVY
GNDDDRADDL AKWVVSTVMG QVKRLPVYRN AVPTQSILTI TSNVEYGKNT GSFPSGHKKG
TPYAPGANPE NGMDSHGMLP SMFSVGKIDY DDALDGISLT NTITPDGLGR DEDERISNLV
GILDAGNGHG LYHANINVLR KEQLEDAVEH PEKYPHLTVR VSGYAVNFVK LTKEQQLDVI
SRTFHQGSVT D
|
|---|
| |