| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0883 |
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| Symbol | |
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| ID | 8709449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1002336 |
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| End bp | 1003766 |
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| Gene Length | 1431 bp |
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| Protein Length | 476 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482983 |
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| Product | 3'-5' exonuclease |
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| Protein accession | YP_003374099 |
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| Protein GI | 283783345 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0349] Ribonuclease D |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAACGAGG AACCAAAGCT TTTAAAAGAG CCTAGAGAAG GAGTTCCAGA AGTCATTGAT
ACGCTTGAAG CATATAAAGA TTATTGCAGC TTGTTGGAGG CAGGCTCCGG TCCTTTAGCT
GCAGACGCTG AGCGAGCTTC CGGTTTTCGC TACAGTCATG AAGATTGGTT GATTCAGTTC
AAACGTAAGG GTGCAGGAAT TGGATTATTA GATCCTATAG AACTTACAAA ACTTGGAGCT
GATTGGAACG AATTTAACAA GGCAGTAGGG GATGTGCCTT GGATTATTCA CGATTCGATG
CAAGATTTGC CAGGATTTTT CAATATTGGT TTGCGCCCAC TTGCATTATT TGATACCGAA
ATCGCAGCTA AATTACTTGG CAGAAAGCGC TTTGGTTTAA GCTCTGTAAC TGAATATTAT
TTGGGTCTTA CTCTTGCAAA AGAACATTCT GCAGCAGATT GGTCTTACCG CCCACTTCCT
AGAGATTGGC GAAATTACGC AGCTTTAGAT GTTGAATTAC TTATTGAGCT AGAAGAAGTA
ATGCGCGTCG AACTTAAAAA GCAAGGTAAA CTTTCTTGGG CGGAAGAAGA ATTTAAACAC
TTACTTAGTA AGGGTGCACA AAAGAAAGCT CCGCATCCAC GTCCATGGCT TAAAATATCG
CATATTAGCG TACTTATGCA CGATCGTGTT GGTTTAGTTA TTGCGAAAGC ATTGTGGCAA
AAGCGAGATG CTTTAGCGCG TGAATATGAT ATTGCGCCAA CTCTGCTACT TTCTGACGCT
GCGATTATTG AAGCTGGTAA GCGTAAACCT AGTAATGCGC GTGCGTTTCG TGCTATTCGT
TCTTTGAATG AGCGAGTGCG AATGCACACT GGCAGTGAGC AAGACAAAAT GTTCGAGCGT
TACGCTCCAA TTCAGCGCAA AGTTAAACCA TCTATTTGGA AAAACGTTAT AGAGAATGCT
ATTTTGCGCG CTAAATCTGG TGAAACGGCT ATGGATGATG TGCATCCAGT ATTACCGAAT
GGAGCTATTC AACTTAATTC GCGCGAATCT CGTAAAACGA ACGTACTTAA GTCAACAGAT
ACTGACGAGT CGCAAGGTTC TAATGATTGT CAGGATTGCC ATGATTTATC GGATTCGCAG
TACTTGCAGG ATATGCAAGA TTCCCAAAGC GCTCCTAGAT CTATGAAATA TTGGCGAGAA
CATCACCCTA AGCGTTACGA GCGTTTACAA AGAGTAAAAG CTGAGTTAAA TCAAATTTCT
GAATACACTC ATACTCCTGC AGAAATTATT ATCAAACCAC AGATTATTCG TAATCTTTGC
TGGCATGATG ATGCGCAAGA TATTGATGTT AAAACATTCT TAAGTGAGCA TGGTGCTCGC
GAATGGCAAA CCCGATTGGT AGCTGAGTCC GTAACTCGCG CTATCATGTA A
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| Protein sequence | MNEEPKLLKE PREGVPEVID TLEAYKDYCS LLEAGSGPLA ADAERASGFR YSHEDWLIQF
KRKGAGIGLL DPIELTKLGA DWNEFNKAVG DVPWIIHDSM QDLPGFFNIG LRPLALFDTE
IAAKLLGRKR FGLSSVTEYY LGLTLAKEHS AADWSYRPLP RDWRNYAALD VELLIELEEV
MRVELKKQGK LSWAEEEFKH LLSKGAQKKA PHPRPWLKIS HISVLMHDRV GLVIAKALWQ
KRDALAREYD IAPTLLLSDA AIIEAGKRKP SNARAFRAIR SLNERVRMHT GSEQDKMFER
YAPIQRKVKP SIWKNVIENA ILRAKSGETA MDDVHPVLPN GAIQLNSRES RKTNVLKSTD
TDESQGSNDC QDCHDLSDSQ YLQDMQDSQS APRSMKYWRE HHPKRYERLQ RVKAELNQIS
EYTHTPAEII IKPQIIRNLC WHDDAQDIDV KTFLSEHGAR EWQTRLVAES VTRAIM
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