| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0878 |
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| Symbol | clpP_1 |
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| ID | 8710072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 996958 |
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| End bp | 997632 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482978 |
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| Product | Clp protease |
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| Protein accession | YP_003374094 |
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| Protein GI | 283783340 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
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| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAAGTG AAGAAGCAAA GTTTGTTGCG CGTGCTGAGC GTTTAGCTGG TTTTGGCGGT
GTCACTTCTG CCCAGCGCAT TACTAATCGT TACGTGTTGC CTCAATTTGG CGAGCAAACT
CCATACGGCA TGAAAACGCA AGATCCTTAC ACTAAGCTGT TTGAAGATCG CATTATTTTC
ATGGGTGTGC AAGTAGATGA CACTTCTGCT GACGACATTA TGGCTCAGTT GCTTGTTTTA
GAAAGCATGG ATTCTGATCG CGATGTGATG ATGTACATTA ATTCACCTGG CGGTTCGATG
ACTGCTATGA CTGCGATTTA TGACACAATG CAATACATTA ATCCAGATGT TCAAACTGTT
TGCTTAGGTC AGGCTGCTTC TGCTGCTGCT ATTATTCTTG CTGCTGGAGC TGCTGGTAAA
CGCATGATTT TGCCGAATGC GCGTGTGCTT ATTCATCAGC CTGCAATGGG TCAAGATTTT
GGTAAAGCTA CTGAAATTGA GCTTCAAGCT AAGGAAATGT TGCGTTTGCG TTCTTGGTTA
GAATCAACTC TTGCAAAGCA TACTGGTCAA GATATTGAGC GCATCCGTAA AGATATTGAA
GTGGATACTA TTTTGACTGC TCCAGAAGCT AAAGCTTATG GAATGGTTGA CGAAGTGCTT
GAGCGCAGAG CATAA
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| Protein sequence | MASEEAKFVA RAERLAGFGG VTSAQRITNR YVLPQFGEQT PYGMKTQDPY TKLFEDRIIF
MGVQVDDTSA DDIMAQLLVL ESMDSDRDVM MYINSPGGSM TAMTAIYDTM QYINPDVQTV
CLGQAASAAA IILAAGAAGK RMILPNARVL IHQPAMGQDF GKATEIELQA KEMLRLRSWL
ESTLAKHTGQ DIERIRKDIE VDTILTAPEA KAYGMVDEVL ERRA
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