| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0832 |
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| Symbol | |
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| ID | 8709725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 943612 |
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| End bp | 945282 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482932 |
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| Product | putative phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
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| Protein accession | YP_003374049 |
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| Protein GI | 283783295 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0138] AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) |
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| TIGRFAM ID | [TIGR00355] phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAACAGA CACAGAGCAA AGAATCAAAC GCAAATGTGC TGATAACCAC AGGTGAAAAG
CAAATTCGTA GAGTTCTTGT TTCAGTTTTT CATAAAGAAG GACTTGAAAT ATTAGCTGAA
GCATTTAGAA AGGCTGATAC TGAAGTAGTT TCAACCGGCT CTACTGCTGC TAAATTGGCG
GAACTTGGCG TTCATGTTAC TGAAGTTTCT GACATTACTG GTTTCCCAGA AAGTCTTGAT
GGAAGAGTGA AGACTTTAGA TCCGCATATT CACGCTGGAA TTCTTGCAGA TATGAGTAAT
GCTGATCATG TAAAGCAACT TGAAAAGCTA AACATAAAGC CGTTTGATGC TGTAGTAGTT
AATTTGTATC CGTTCGTAGA CACTGTAATG AGCGGTGCTG ATAGTGACGC AATTATTGAG
AAAATTGATA TTGGTGGACC TTCTATGATT CGTGCTGCAG CAAAGAATCA TAAGTCTGTT
GTCGTTATTA CAGATCCTGC AGATTACCAG CTTTTAGCTA ATAGAATCGT TTCAGGTGAA
GGCTTTAATT TGCAAGAGCG CGAATATTTG GCTGGTAAAG CATTTGCTCA TACAGCAGCT
TACGATGCTT CTATATCTGA GTGGACAAGT AAAGCATGGC AGAAGCCTGA AAGTTTGAAC
ACAAATGATG AAGAAGATAG TAAAAATGCT GAATCTGTGA AGCTTCCTGC AAACTACACG
CGCACTTGGA GCTTAGAGCA TACGCTTCGA TATGGCGAGA ACCCTCATCA GCAAGCAGGA
TTGTATTTAG ATCCTCTGCA TAAGGGCGGT TTAGCTCAAG CTGAGCTTCT TGGCGGAAAA
CCTATGAGCT ACAACAATTA TGTGGATGCG GATGCTGCTT GGCGTGCGGT TTGGGATTTT
GCTCCACAAA TTGCAGTTGC TGTTTGCAAG CATAATAATC CATGCGGTTT AGCTATTGGA
GCTAATGCAG CTGAAGCTCA CAAGAAAGCT CACGCTTGCG ATCCTGTAAG TGCTTACGGT
GGTGTGATTG CTTCAAATAC TACAGTCACT TTAGAAATGG CAGAAAGTGT GCGTCCAATT
TTCACAGAGG TTATTGTGGC TCCAGACTAT GAGCCTGAAG CTTTGGAATT GCTTCGCACT
AAAAAAAAGA ACCTCCGCAT TTTGAAGGTT GCAACTCCGC CAGTTTTAGG TTTGCAAGTT
CATCCTATTG ACGGCGGTGC TTTAGTTCAG TCTGCAGATA AGATTGATGC AGTTGGTGAT
AATCCTGAAA ACTGGACGCT TGTTTCTGGA GATCCTGCTG ATGCTGGTAC TTTGCGCGAT
TTGCAATTTG CCTGGCGTTC GCTTCGTTGT GTAAAGTCTA ACGCAATCCT ACTTGCGCAT
GATAATGCTA CTGTTGGCAT TGGTATGGGG CAGGTTAATC GCGTGGATTC GTGCCATTTG
GCTGTTGAAC GTGCGAATAC TTTGGCTGAT GGTGCTGAAC GTGCTCGTGG AGCTGTTGCG
GCTTCGGATG CTTTCTTCCC ATTCGCTGAC GGTCCGCAAA TTTTGATTGA AGCTGGCGTT
CGCGCAATCG TGCAGCCTGG TGGCTCTATT CGCGACGAAG AAGTGTTCGA AGCTGCGCGC
AAAGCTGGTG TAACGATGTA CACTACCGGT ACTCGTCACT TCTTCCACTA A
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| Protein sequence | MQQTQSKESN ANVLITTGEK QIRRVLVSVF HKEGLEILAE AFRKADTEVV STGSTAAKLA
ELGVHVTEVS DITGFPESLD GRVKTLDPHI HAGILADMSN ADHVKQLEKL NIKPFDAVVV
NLYPFVDTVM SGADSDAIIE KIDIGGPSMI RAAAKNHKSV VVITDPADYQ LLANRIVSGE
GFNLQEREYL AGKAFAHTAA YDASISEWTS KAWQKPESLN TNDEEDSKNA ESVKLPANYT
RTWSLEHTLR YGENPHQQAG LYLDPLHKGG LAQAELLGGK PMSYNNYVDA DAAWRAVWDF
APQIAVAVCK HNNPCGLAIG ANAAEAHKKA HACDPVSAYG GVIASNTTVT LEMAESVRPI
FTEVIVAPDY EPEALELLRT KKKNLRILKV ATPPVLGLQV HPIDGGALVQ SADKIDAVGD
NPENWTLVSG DPADAGTLRD LQFAWRSLRC VKSNAILLAH DNATVGIGMG QVNRVDSCHL
AVERANTLAD GAERARGAVA ASDAFFPFAD GPQILIEAGV RAIVQPGGSI RDEEVFEAAR
KAGVTMYTTG TRHFFH
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