Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0823 |
Symbol | |
ID | 8709967 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 931480 |
End bp | 932049 |
Gene Length | 570 bp |
Protein Length | 189 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 646482923 |
Product | hypothetical protein |
Protein accession | YP_003374040 |
Protein GI | 283783286 |
COG category | [S] Function unknown |
COG ID | [COG3601] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCATTT CTAATACAAA TAATCACCAA ACTTATGCAA AGAACTCTAA CTGGTCTAGC GAAAAAATAG CAAAATACGC TCTATTCGTG GCACTTTCAA TGGCTGTAAG TTTCATAGAA TTTCCACTTA TTCCAGACTT GTCGTATTTA AAATATGATC CTTCAGGAAT AGTATGCCTA GTTGCAGGAT TCGCATATGG TCCTGCAGCT GCAGCAATAG TAAGCATACT AGGTTTCGCA CCGCACTTAT TTACCAATCC ACTAGGCACA GTTATGGCAG TGCTAGTATC TTTAGGAGCT AGCGTCACAG CGGCATTAAT TTACAAAAAA ATGCATACCA GAAAAGGCGC AATAATCGGA CTTTTGGCAG GATCAATTAT TGCTATTGCT CTTGCAATAG CTGGAAATCT TGTTATTACG CCACTTTATG CTCACATGAC TGTTTCACAG GTTGTGGCTC TTATTATTCC AGCACTGCTA CCGTTTAATA TTATTAAACT TGCACTTCAC GTTGTAGTAA CTATGCTTAT TTACAAACCA ATTTCCAACC TGCTACACGA AAATAAATAA
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Protein sequence | MGISNTNNHQ TYAKNSNWSS EKIAKYALFV ALSMAVSFIE FPLIPDLSYL KYDPSGIVCL VAGFAYGPAA AAIVSILGFA PHLFTNPLGT VMAVLVSLGA SVTAALIYKK MHTRKGAIIG LLAGSIIAIA LAIAGNLVIT PLYAHMTVSQ VVALIIPALL PFNIIKLALH VVVTMLIYKP ISNLLHENK
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