| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0789 |
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| Symbol | |
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| ID | 8710007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 893387 |
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| End bp | 894472 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482890 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_003374007 |
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| Protein GI | 283783253 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAAAC AACGTGAACA ATCATTATTA TTCGATGCTC CAGGTCCAAA AGCTCTTAAG
AAAATTCGCA TAGCTAATAT TATTGCCGGT TGCATTTTTG TTATTTGCAT TATTGCTATT
CTCGTTCGTT TGAGCAATCC TCCAGAGGGA GAAAACCAAC TTTCTTGGAC GCTTTGGAAT
CCTGCACTCG AATCTGAGGC CTGGGTTGAT TTTTATCTTC CTGGATTATG GATGACACTA
AAAGCATCGT TACTTGCAGT AGTTGGTTCT ATTGTATTTG GCTTATTCTT CGGACTTTGC
CGTTTACTAC CTAATTTTAT TATTCGTAGT ATTTCCGCAA TAGTAGTAGA ATTTTGCCGC
GCAGTACCAG TATTGATGCT TATGATTTTC TTGTGGAGAG CATTCGCACT TTCTGGTATG
AAAGAATCAT CATACTGGGC TGTTGTTTTG GCACTGATTA TGTATAACGG CTCTGTTGTT
GCAGAACTTG TTAGATCAGG TGTTGGCAAC TTGCCAAACG GTCAAAGAGA AGCTTCACTT
GCATTAGGAT TGAGCGAGTA CCAATCATTG ACACAAATTG AAATGCCTCA AGCAATTATT
GCTATGATGC CTGCAGCAGT AACTCAGCTT GTAGTTGTTT TGAAGGATAC TGCACTTGGT
TCAATTATTA TGTACACTGA TTTGCTTCAG GAATCGCGCA GACTCGGATC AATGTACTTT
AATATTTTGC AAACATTAAG CGTTGCAGCA GTAATATATT TCCTTATTTG CTTGGCATTG
TCTTGGTTTG CACAATGGTT GCCATCGCAC TTGAAGAATC GAACTGCCGC TCCAACAGAA
CCAGAGCCTG TTGCTCCAAT TGCTATTATG GATCCTTCTA ATGTGAACCA AATGGCAGTT
GCTAGCGAAG TTAAAGAGCT TCCTTATGGC GGTACTCCAC GTAAGTATCA CGTACATCAT
CGCGGTACGA ACGCTTCTAT TCACCATTGG CGCCACACTC GTTACTTGCA AGGCTACGAC
GAGCATCATC TAAAAACTGG CGATGAACCG GAAGAAAATG ATGACAACAA TGCAGAAAAT
AACTAA
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| Protein sequence | MAKQREQSLL FDAPGPKALK KIRIANIIAG CIFVICIIAI LVRLSNPPEG ENQLSWTLWN
PALESEAWVD FYLPGLWMTL KASLLAVVGS IVFGLFFGLC RLLPNFIIRS ISAIVVEFCR
AVPVLMLMIF LWRAFALSGM KESSYWAVVL ALIMYNGSVV AELVRSGVGN LPNGQREASL
ALGLSEYQSL TQIEMPQAII AMMPAAVTQL VVVLKDTALG SIIMYTDLLQ ESRRLGSMYF
NILQTLSVAA VIYFLICLAL SWFAQWLPSH LKNRTAAPTE PEPVAPIAIM DPSNVNQMAV
ASEVKELPYG GTPRKYHVHH RGTNASIHHW RHTRYLQGYD EHHLKTGDEP EENDDNNAEN
N
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