| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0734 |
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| Symbol | |
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| ID | 8709822 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 831739 |
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| End bp | 832707 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482839 |
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| Product | hypothetical protein |
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| Protein accession | YP_003373961 |
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| Protein GI | 283783207 |
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| COG category | [K] Transcription |
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| COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00313074 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATCGAG CAAGGAGAAT GACGAGAGTG AATACTGAGC ACCATCCGTG GATTGACATG
ACGGATGAGG AGATGCTCAG AAGCTGTGGG CTTATACTTG AGGATCCGGA AACGAACCAA
GAAGGTATAA CACTTGCGGC AGTCTTGCTC TTTGGTACGA ATAACCGTAT CATGTCCGTG
TTACCTCAGC ATAAGACAGA CGCTATTTTC AGAGTGTTCA ATGTTGATCG TTATGATGAC
AGGGATGTGG TGATCACAAA CCTGATTGAA AGCTATGATC GTCTGATGGA ATTTGGAAAG
AAGCATCTGA ATGATGTTTT TACATTGGAT GGTGTCCAGC GGATAAGCGC CAGAGATAAA
ATCCTGCGTG AGATTATTTC CAACCTGCTC ATGCACCGTG ATTTTTCCAG TGGATATGTA
CCAAAGCTTG TCATTGAACG GGATAAGATT ACAACAGAGA ATGCGAACCT TGCGCATGGG
CACGGAAACT TGAATCTGAA AACATTCAAG CCATTTGCAA AGAATCCGCC GATAGCAAAA
GTGTTCCGTG AGATAGGTCT TGCTGACGAA CTGGGAAGCG GTATGCGCAA CAGCTATAAA
TACACGAAGA TGTATTCTGG TGGAGAGCCT GTCTTTACAG AGGCAGATGT TTTTACGACA
GTGATTCCTC TTTCTGAGGC TGCAACTGCC AAGGTCGGGC CGACCGAAGA ACTTGATCCA
AGGGAACAAG ATAGGGAACA AGATAGGGAA CAAGTAAAGG AGCAAGTTAC GATACAAGCT
CTCCTTCAAT TTTGTATCGT TCCTCGTAGT CGGAAAGAAA TGCAAGAATT TATGGGGCTG
ACCGGTAGAA GAAACTTTTC TGAAAAATAT ATCAAGCCTT TGCTTAGTGC AGGAAAAATA
GAAATGACGA TACCAGATAG GCCAAACAGC AGGAACCAGA AATATAAAAA AGTGAACATT
GAAGATTAA
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| Protein sequence | MDRARRMTRV NTEHHPWIDM TDEEMLRSCG LILEDPETNQ EGITLAAVLL FGTNNRIMSV
LPQHKTDAIF RVFNVDRYDD RDVVITNLIE SYDRLMEFGK KHLNDVFTLD GVQRISARDK
ILREIISNLL MHRDFSSGYV PKLVIERDKI TTENANLAHG HGNLNLKTFK PFAKNPPIAK
VFREIGLADE LGSGMRNSYK YTKMYSGGEP VFTEADVFTT VIPLSEAATA KVGPTEELDP
REQDREQDRE QVKEQVTIQA LLQFCIVPRS RKEMQEFMGL TGRRNFSEKY IKPLLSAGKI
EMTIPDRPNS RNQKYKKVNI ED
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