Gene HMPREF0424_0712 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0712 
Symbol 
ID8709888 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp808568 
End bp809095 
Gene Length528 bp 
Protein Length175 aa 
Translation table11 
GC content37% 
IMG OID646482817 
Producthypothetical protein 
Protein accessionYP_003373939 
Protein GI283783185 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.485159 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCTGG AAGATATTCA AAAGCCTTTA CATGATGAAA CGCTTTTTTT AATACTACTT 
TCTGCATCGC TTGTTGTTAT CTTTATTGCT TTTGCGGTTT TATATTTTTC TTTTAAAAAG 
CCAAAAAAAT TAACTGAAAG TAGCAATTCT ACAGAAGCAG TTCACGTTCA TAATGTAAAC 
AAACAAGCTT GGCGTAAAGA TATTGATGCG ATTGTTGAGA AGTATCATAA CAATGAACTT 
ACTAAAGATC AGGCTTGTGC AAAATTGGCG TCTATTGCTA GATCTTATAT TTCGAAGATG 
AGCGGTGAAG ATATTCAAAC TCACACTTTG GGAGAATTGG CTTCTTTACG TTTGAAATGG 
CGCAATAAAA AAGGTGCTGA TATGTTACGC CAAACAATAT CTGCTTTGTA TCCTCCAGAA 
TTTGCTGATC GCAAAGCAAA CGAGCAAGCG CGAAATACTA CTGTTGAGCA GGCTGCTGAA 
TGGGTTTTAG TATTGCTTGA AGGCTGGCAA ACGAAGGACA AACGTTGA
 
Protein sequence
MSLEDIQKPL HDETLFLILL SASLVVIFIA FAVLYFSFKK PKKLTESSNS TEAVHVHNVN 
KQAWRKDIDA IVEKYHNNEL TKDQACAKLA SIARSYISKM SGEDIQTHTL GELASLRLKW 
RNKKGADMLR QTISALYPPE FADRKANEQA RNTTVEQAAE WVLVLLEGWQ TKDKR