Gene HMPREF0424_0705 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0705 
Symbolhup 
ID8709266 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp799382 
End bp799663 
Gene Length282 bp 
Protein Length93 aa 
Translation table11 
GC content53% 
IMG OID646482810 
ProductDNA-binding protein HU 
Protein accessionYP_003373932 
Protein GI283783178 
COG category[L] Replication, recombination and repair 
COG ID[COG0776] Bacterial nucleoid DNA-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCATACA ACAAGTCTGA TCTCGTTTCT AAGATCGCAC AGAAGTCCAA CCTGACCAAG 
GCACAGGCCG AAGCCGCCGT CAACGCATTC CAGGATGTGT TCGTTGAGGC TTTACAGTCC
GGTGAAGGTT TGAAGCTTAC TGGTCTGTTC TCCGCAGAAC GCGTAAAGCG TGCTGAGCGC
ACTGGCCGCA ACCCGCGTAC CGGTGAAACC ATCAAGATTC CAGCTTCTTA CGGTGTACGT
ATTTCCGCTG GCTCCTTGTT GAAGAAGGCT GTTACTGCCT GA
 
Protein sequence
MAYNKSDLVS KIAQKSNLTK AQAEAAVNAF QDVFVEALQS GEGLKLTGLF SAERVKRAER 
TGRNPRTGET IKIPASYGVR ISAGSLLKKA VTA