| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0693 |
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| Symbol | |
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| ID | 8709518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 783303 |
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| End bp | 785681 |
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| Gene Length | 2379 bp |
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| Protein Length | 792 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482798 |
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| Product | DNA gyrase, B subunit, C-terminal domain protein |
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| Protein accession | YP_003373920 |
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| Protein GI | 283783166 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTCTCTC ATAAAGAGCA GTATGATGCC GACAGTTTGA CAGTGCTAGA AGGCTTGGAT
GCTGTAAGAA AGCGTCCAGG CATGTATATT GGCACTACAG ACAGCCAAGG CTTAATGCAT
TGCCTTTGGG AGATTATTGA TAATGCGGTT GACGAGGCTT TGGCGGGTGC TTGTGACCAT
ATTATTGTTA CTCTTCACGA CGATGGATCT ATTGAAGTTG CAGATAACGG TCGTGGTATT
CCAGTAGATG TTGAGCCAAA AACAAAGCTC ACTGGTGTTG AAGTTGTTTT AACTAAGCTT
CACGCTGGAG CAAAGTTTGG TAACGCTTCT TATAATGCTG CAGGCGGTTT GCACGGTGTT
GGATCTTCTG TTGTAAACGC TTTAAGCTTG CGTTTAGATG TTGAAGTCGA TAGAGACGGT
AAAACGCATC ATATGGCGTT CCATCAAGGG CATCCTGGTG TGTATAGCGA TGCTGACCCG
GAGCATCCAT CTCCAGCTTC TCCATTTAAG CGTACGCGTA AGAACAAGTC TACTGAGCTT
GAAATTATCG GCACTGTTTC GCCAAAAACT ACCGGAACTC GTGTACGCTA CTGGGCGGAT
CCAGAAATTT TTAATTCGAC TGCGCATTTC AGCTATGAGC AGCTTATTGC TCGCGTGCGT
CAAACAAGTT TCCTGGTTCC AGGCTTAAAA ATTACTGTTA TTGACGAGCA TGTTCCTGAA
GGTGAATCTG CAAATATTGA AGAAATTGAT TCTACTAAAG ATGATGTTGC AGAAGATAAT
CTTCTTGAAA ACCAGTCTGA TAATAGCGAT AACTCTGTGT CTGAATTTGA AGAATTAGAA
TCTGAAACAG CATTAGAAGA TGAAGATGAT TCTGAAGATA AGACTGAAAA TATCGCGACT
GAAGATGAGG CTGAAGATGC TGAATCTGAA GAATCAGTTG CACAATCTGT TGCAAATGCT
CAGTCTGCTA ACTCAATGCA AAATAAGCAT CATCCTCGAG TAGTTGAATT TTTGCATAAT
GGTGGCGTTA AAGATTTCGT TGATTTTCTT TCAAAAGGTG AAGCAGTATC GGATATTTGG
CGTATTTCTG GCGAAGATAC ATATGTAGAA GAAACGCAAG CTGTTGATTC TGCAGGAGAT
TTACACGCGC AGCAAGTAAC TCGAAAATGC GGCGTTGACA TTGCAATGCG TTGGGTAAAC
GGCTACGATT CAACGATTAT TAGTTTCGTA AACGTTGTTG AAACTCCTGG CGGAGGTATG
CACGTAGACG GATTCTTGCA AGGATTGACT AAGCAAATTC GTAAAGCTGT TGAAGACAAC
GCGCGCAAAC TAAAAGTAAA TCTTAAAGAT TCGAATACGA AAATTGAGCG CGATGATATT
ACAGCAGGAT TGGTAGCAGT CGTAACTGTT CGCATTGCTG AGCCTCAATT CCAAGGTCAA
ACTAAGGATG TTCTTGGAAC TGCTCAAGTT AAGCCAATCG TTACCAAAAT GACTGACGCT
CAATTCGGTG AGATGATTAC CGGTTCTAAG CGAGGTTTTA AAGAGCAGTC TTCTAGAGTT
TTGGAAAAAA TTGTTTCCGA AATGCATGCG CGTATTCAAG CGCGTAAAAC TAAGGAAGTT
ACGCGCAGAA AGAACGCTCT TGAGTCTGCT TCAATGCCAC CGAAACTTTC TGACTGCCAG
CCTGGAAACG ACGATGTTGC AGAACTTTTC ATCGTCGAGG GCGATTCTGC ACTTGGCACT
GCAAAAGCTG CTCGAAATTC TGCTTTCCAA GCGCTTCTTC CAATTCGCGG TAAGATTTTG
AACGTGCAAA AAGCAAGTCT TGCACAAATG CTTTCCAACA AAGAGTGCGC TGCAATTATT
CAGGTTGTTG GAGCAGGATC TGGCGCAAGT TTCGATATTT CACAAGCACG TTATAACAAG
ATTGTTATGA TGACCGATGC AGATGTTGAC GGCGCGCATA TTCGTATTTT GCTGCTGACG
CTGTTCTACC GTTATATGCG CCCGCTTATT GAGCACGGCC ATGTTTATGC TGCAGTGCCA
CCTCTTCACA GGATTGCGCT CGCTGGAAAG CGCAAGGGCG AGTATATTTA CACGTATTCC
GACGATGAAT TGGCTGGAAA GCTTGATGAT TTGCAAGCTA AAGGCATTGA TTTTAACAGC
GATATTCAGC GTTACAAGGG CTTGGGCGAG ATGGATGCAG ATCAGCTTGC AGACACAACC
ATGGATCCTA GAACTCGCAT GCTTCGAAGG ATTCGTATGG AAGATGCTCA GCAAGCGAGT
GAAGTATTTG ATTTGCTAAT GGGCGATGAT GTTCCTCCGC GCAAGCAGTT TATTGTTGAT
AACGCAGACG ACTTCGATCG TTCCAAAATC GATACCTGA
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| Protein sequence | MVSHKEQYDA DSLTVLEGLD AVRKRPGMYI GTTDSQGLMH CLWEIIDNAV DEALAGACDH
IIVTLHDDGS IEVADNGRGI PVDVEPKTKL TGVEVVLTKL HAGAKFGNAS YNAAGGLHGV
GSSVVNALSL RLDVEVDRDG KTHHMAFHQG HPGVYSDADP EHPSPASPFK RTRKNKSTEL
EIIGTVSPKT TGTRVRYWAD PEIFNSTAHF SYEQLIARVR QTSFLVPGLK ITVIDEHVPE
GESANIEEID STKDDVAEDN LLENQSDNSD NSVSEFEELE SETALEDEDD SEDKTENIAT
EDEAEDAESE ESVAQSVANA QSANSMQNKH HPRVVEFLHN GGVKDFVDFL SKGEAVSDIW
RISGEDTYVE ETQAVDSAGD LHAQQVTRKC GVDIAMRWVN GYDSTIISFV NVVETPGGGM
HVDGFLQGLT KQIRKAVEDN ARKLKVNLKD SNTKIERDDI TAGLVAVVTV RIAEPQFQGQ
TKDVLGTAQV KPIVTKMTDA QFGEMITGSK RGFKEQSSRV LEKIVSEMHA RIQARKTKEV
TRRKNALESA SMPPKLSDCQ PGNDDVAELF IVEGDSALGT AKAARNSAFQ ALLPIRGKIL
NVQKASLAQM LSNKECAAII QVVGAGSGAS FDISQARYNK IVMMTDADVD GAHIRILLLT
LFYRYMRPLI EHGHVYAAVP PLHRIALAGK RKGEYIYTYS DDELAGKLDD LQAKGIDFNS
DIQRYKGLGE MDADQLADTT MDPRTRMLRR IRMEDAQQAS EVFDLLMGDD VPPRKQFIVD
NADDFDRSKI DT
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