| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0670 |
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| Symbol | |
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| ID | 8709712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 753685 |
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| End bp | 754593 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646482775 |
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| Product | RNA methyltransferase, TrmH family |
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| Protein accession | YP_003373898 |
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| Protein GI | 283783144 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0566] rRNA methylases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTTAA AAGAACTAAT TGATAATACT CACAGTGAGC GCGTGCGCAG ACTCGTTTCT
TTAGGTCGCG CAAAGTCGCA TGATTTGCAG CGTTTTTTAG TTGAAGGTCC GCAAAGTGTG
CGCGAAGCTG TACGTTATGC CACAGATTCG TTATGTGATA TTTATGTTAC TAAAGATGCT
TGTGAAGGTA ATGAAAAGAA AAGTTCCCAA TTTTCTTCTT TGCGGGAAAT AGTTAAAGAA
GCTTTATCTC GATCTTGTTA TGTTCATCCT GTTGAACCGA GTATTATGCA AAAAATTAGT
GCTGATTCAC AGGGAATTGT TGCGGTTGCT AATTCGAAAT CTTTAGATGA TATCTATTTT
AGTGAGTTTA AAAATTTGCA ACAATCAGCA CAAGTAAAAT CAAAAAACGA TTTTAAGCCT
CTTCGTATTG CAGCTTGCTG GCAGGTAAGA GATCCTGGCA ATGCTGGTGC TATTATTCGC
GTTGCAGATG TTGCTGGATG CGATGCTGTT GTTTTTGTTG ATGATTGCGT AAGTCGTTGG
AATTCTAAGC TTGTGCGTTC GACTGCAGGT TCACTATTTC ATCTTCCTGT AGTGCAATTA
AGCGTTCAAG ACTGGTTCGA ATGCGCTGCA AAATCAAATA TTCGAATTAT TGCAGCTGAT
ATTTACGGAA CTGACAAGAT TAAACCTGTG CCATTTCCAA AAATTTTAGT CAATTCCGAG
GTTATTAGCA GTTCTTTGGC TATTTTATTT GGCAATGAAG CTAGAGGCTT ACCTAAAGAA
GTATTGCAAC AGGTTGACGA TATTTCAATA ATTCCAATAT ATGGAAAAGC AGAATCAATG
AACCTTGCAA CAAGTGCAGC AGTAATGCTT ATGGGCTTGG CTATGTCGAG TCATGAGCGA
AAAATATAA
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| Protein sequence | MPLKELIDNT HSERVRRLVS LGRAKSHDLQ RFLVEGPQSV REAVRYATDS LCDIYVTKDA
CEGNEKKSSQ FSSLREIVKE ALSRSCYVHP VEPSIMQKIS ADSQGIVAVA NSKSLDDIYF
SEFKNLQQSA QVKSKNDFKP LRIAACWQVR DPGNAGAIIR VADVAGCDAV VFVDDCVSRW
NSKLVRSTAG SLFHLPVVQL SVQDWFECAA KSNIRIIAAD IYGTDKIKPV PFPKILVNSE
VISSSLAILF GNEARGLPKE VLQQVDDISI IPIYGKAESM NLATSAAVML MGLAMSSHER
KI
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