| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0659 |
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| Symbol | |
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| ID | 8709554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 743057 |
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| End bp | 744055 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646482765 |
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| Product | putative lipoprotein |
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| Protein accession | YP_003373889 |
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| Protein GI | 283783135 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAATT TAAAAATGCG ATTTTCTAAA AAGAGCATTA TTGCATTAAT CTGCGCTGCT
TGTGCAACTG TATCTCTTGC AGCTTGCGGA AGCTCACAAA AATCATCCAA CGCTTCTTCA
AAAGAAGATG CTGGAACTAT GAGAGTTGCT TATCTTTCTA CAGCAAATTA TTTAACTACT
TTGAAAAATG AGAAATTCCT TCAAGACGAA TTTGGCAAAT CTAAAGTAGT TTACACTGGT
CCTTACACTC CAGTTGACGG TCTTACTGCT GTGATGAGCG GAAATGCAGA TGCTACAACT
ACTGGAACTG GACGCTTCAT TGATTTGATT GCTGAAGGAC AACCATGGGT AGCTTTTGCG
CTCGAATATT ACAATGGTGA TTCTCAAGGA ATCGTTGCAT CCGCAAAAAG CGGAGTGAAA
ACACTAAAAG ACTTATACGG CAAAAAAGTT GCTATTATTC ACAACGGTGA CACTGGCGAT
TACATGCTTC ACCGCGCATT CGATAAAAGT GGTTTAGACG TTTCTAAAGT TAACAAAGTT
GAGATGAGCC CTAAGAACTT CCAGGCAGCA TTTACTTCTG GACAGATTGA TGCAATTTCC
TCATTCGATC AGAATCTTGC TGTAGCAATG ACAACTCCAG GCGCAAAATT GCTTGTAAAT
GCTAAAAAGT ACGGCAATAT GAACGTTACT ATTCACATTG TTTCTAAGAG CTTTGCCAAA
AAGCATCCAG AGCTTGTTAA GAAGATGTAC AAGGCTCTTG TTCGTGAAGC AGAAAAGTCT
CATAAAGAAA ACAATGTTAT TGGAAACGCT TACAAGCAGC TCGGAGCAAG CGAAACTATT
ATTAAGCAAA TTGAAAAGTT TGACAATCCA ACTATTCGTC CAATCGATGA AAAAGGTTTG
AAAATGATGG AAACTCAGGC TAAAGAATAC GTGAAATATG GTTTAATTAA GCAAGCTCCA
AAGAATTTGA AAGATTCTGT AATGGATTGC ACAAAGTAA
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| Protein sequence | MANLKMRFSK KSIIALICAA CATVSLAACG SSQKSSNASS KEDAGTMRVA YLSTANYLTT
LKNEKFLQDE FGKSKVVYTG PYTPVDGLTA VMSGNADATT TGTGRFIDLI AEGQPWVAFA
LEYYNGDSQG IVASAKSGVK TLKDLYGKKV AIIHNGDTGD YMLHRAFDKS GLDVSKVNKV
EMSPKNFQAA FTSGQIDAIS SFDQNLAVAM TTPGAKLLVN AKKYGNMNVT IHIVSKSFAK
KHPELVKKMY KALVREAEKS HKENNVIGNA YKQLGASETI IKQIEKFDNP TIRPIDEKGL
KMMETQAKEY VKYGLIKQAP KNLKDSVMDC TK
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