Gene HMPREF0424_0503 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0503 
Symbol 
ID8708743 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp548678 
End bp549229 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content38% 
IMG OID646482617 
Producthypothetical protein 
Protein accessionYP_003373744 
Protein GI283782990 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0659116 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAAAGG TAAAAAAGAT TGTAACATCA CTGATTGTGA CTGTTTTGTC TTTCGGATTC 
TTGTCAACAA CAATTTCAGC TGCGGAAGCG ACTGAAAATA AGTCTACAGC TATTGTACAA 
CAGGATGTTA AGAAAATTGA ACAAGAAGTT CGTTTTATTT TTGAAGAAGC TAGCAGTTAT 
AAGAATGGCG TGGTTTCTGT TAAAGATGAG CTCCTTAAGA TGAAATATGG AAAAGTAATG 
GCAGCATACA TTGCTGAAGG TATTCGACAA GTATATACAA ATGATAACCT GTTGGACGCA 
ATCCGCGCGA ATAGCCAAGA TAAGGATTTT TGGTCTTGCA TGGGCGGCGA ACTTATAGGT 
TTAATTCCTG GGATGGATAT TGCTCAACTG CTTTCCAGTG GTGATTTTAA AGCTTATATT 
GAAGGGCATG CTTGGGATAA GCTTGCTAAA TTCCTTGCAA AACAAATCGC TAAATTTGGA 
TTGAAGGTGA ATGTTGCAGG TATCGTAGCA TCAATCGCAA TTGGCGCTGG GAAATGTCTC 
ATTTTTGGAT GA
 
Protein sequence
MLKVKKIVTS LIVTVLSFGF LSTTISAAEA TENKSTAIVQ QDVKKIEQEV RFIFEEASSY 
KNGVVSVKDE LLKMKYGKVM AAYIAEGIRQ VYTNDNLLDA IRANSQDKDF WSCMGGELIG 
LIPGMDIAQL LSSGDFKAYI EGHAWDKLAK FLAKQIAKFG LKVNVAGIVA SIAIGAGKCL 
IFG