| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0499 |
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| Symbol | |
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| ID | 8709286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 545778 |
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| End bp | 546722 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482613 |
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| Product | hypothetical protein |
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| Protein accession | YP_003373740 |
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| Protein GI | 283782986 |
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| COG category | [K] Transcription |
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| COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.12041 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATACTG AGCACCATCC GTGGATTGAC ATGACGGATG AGGAGATGCT CAGAAGCTGT
GGGCTTATAC TTGAGGATCC GGAAACGAAC CAAGAAGGTA TAACACTTGC GGCAGTCTTG
CTCTTTGGTA CGAATAACCG TATCATGTCC GTGTTACCTC AGCATAAGAC AGACGCTATT
TTCAGAGTGT TCAATGTTGA TCGTTATGAT GACAGGGATG TGGTGATCAC AAACCTGATT
GAAAGCTATG ATCGTCTGAT GGAATTTGGA AAGAAGCATC TGAATGATGT TTTTACATTG
GATGGTGTCC AGCGGATAAG CGCCAGAGAT AAAATCCTGC GTGAGATTAT TTCCAACCTG
CTCATGCACC GTGATTTTTC CAGTGGATAT GTACCAAAGC TTGTCATTGA ACGGGATAAG
ATTACAACAG AGAATGCGAA CCTTGCGCAT GGGCACGGAA ACTTGAATCT GAAAACATTC
AAGCCATTTG CAAAGAATCC GCCGATAGCA AAAGTGTTCC GTGAGATCGG TCTTGCTGAC
GAACTGGGAA GCGGTATGCG CAACAGCTAT AAATACACGA AGATGTATTC TGGTGGAGAG
CCTGTCTTTA CAGAGGCAGA TGTTTTTACG ACAGTGATTC CTCTTTCTGA GGCTGCAACT
GCCACGGTTG GGCCGATTAC CCAAGGTACC CCACAAGTCG TCCCTCAAGA TACCCATCAA
GTCACCCCCC AAGATCTGGA ACAAAGGTTA TTGAGATTAA TTGATTTTTG CAGTACACCG
CGAAGTAAGC GTGAGATGAT GGATTACCTT GGCCTTACGG ATAGCAAGAA TTTCAGAGAA
AGGTATCTTG TTCCTTTGCT TAGTTCAGGA AAAATAGAAA TGACGATACC AGATAAGCCA
AACAGCAGGA ACCAGAAATA TAAAAAAGTG AACATTGAAG ATTAA
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| Protein sequence | MNTEHHPWID MTDEEMLRSC GLILEDPETN QEGITLAAVL LFGTNNRIMS VLPQHKTDAI
FRVFNVDRYD DRDVVITNLI ESYDRLMEFG KKHLNDVFTL DGVQRISARD KILREIISNL
LMHRDFSSGY VPKLVIERDK ITTENANLAH GHGNLNLKTF KPFAKNPPIA KVFREIGLAD
ELGSGMRNSY KYTKMYSGGE PVFTEADVFT TVIPLSEAAT ATVGPITQGT PQVVPQDTHQ
VTPQDLEQRL LRLIDFCSTP RSKREMMDYL GLTDSKNFRE RYLVPLLSSG KIEMTIPDKP
NSRNQKYKKV NIED
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