| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0488 |
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| Symbol | |
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| ID | 8709522 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 533048 |
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| End bp | 534040 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482602 |
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| Product | putative oligopeptide ABC transporter, permease protein OppC |
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| Protein accession | YP_003373729 |
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| Protein GI | 283782975 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.359431 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGATA ATTTGATGAA AAATGATTTG ATTGCAAATA ATGCTTCAAA TTGCAATATA
TTACCGGGGC AAGAACGCTA CGTTGCACCA TTAGACGATA CGCCTATTCA AGAAGTGGAT
TCCGTAGACG AATCCGCTGC TGCAACGAGT ATGTGGGCAG ATACTTGGAG AACTTTGCGC
AGGAATCCAT TGTTTATTGT TTCTGCAATT TTGATTATTG CAATTATTTT TGTTGCATTC
TTCCCAAGCA TTCTTACAAA GCACAATCCT AATTATTGCG TTTTGGAACA CTCTCTTGAG
CCAGCTTCAG CCGCGCATCC ATTTGGTTTT GATATGCAAG GTTGCGATAT TTATGCTCGA
GTTGTTTATG GTACTCGTAC ATCGCTAAGT GTTGGTTTGC TTGCAACTAT TTTGGTTGTA
CTTGTTGGTT CTTTAATTGG TGCGTTAGCA GGATTCTTCG GAGGCTGGGT TGATACTATT
CTCAGCCGAA TAACTGATAT CTTCTTGGCT TTACCAATGC TTCTTGGTGC AATCGTAGTT
TTACAAATGT TCCGTACATC TAAATCAATT TGGAAAATTG TGCTTGTTAT GGTGCTTTTT
GGATGGGTTA GCGTTGCTCG TATTGCACGA AGCGCTGTTA TGGAATCAAA AAATCTTGAA
TTCAATACCG CATCTACTGC TTTAGGATCT ACTCCAATAC GTAATCTTTT CAAACACATT
ATCCCGAACT CTTTGGCTCC AATAATTGTT GTTGGAACAA CTTCGCTTGG AACTTATATT
GTGTTGGAAG CAACATTAAG CTTCCTTGGA ATTGGTTTAC CAAGTACTAC TGTCAGCTGG
GGTGGAGATA TTTCTACCGC TAGAAATGTT CTTACTACGA ACCCAGAAGT CTTGTTCTAT
CCGTCTATTG CGCTCGCAAT TACTGTGCTC GCCTTTATTA TGATGGGTGA TGCTGTAAAG
GATGCATTAG ATCCGAAGAG CCGTAAGGCG TGA
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| Protein sequence | MEDNLMKNDL IANNASNCNI LPGQERYVAP LDDTPIQEVD SVDESAAATS MWADTWRTLR
RNPLFIVSAI LIIAIIFVAF FPSILTKHNP NYCVLEHSLE PASAAHPFGF DMQGCDIYAR
VVYGTRTSLS VGLLATILVV LVGSLIGALA GFFGGWVDTI LSRITDIFLA LPMLLGAIVV
LQMFRTSKSI WKIVLVMVLF GWVSVARIAR SAVMESKNLE FNTASTALGS TPIRNLFKHI
IPNSLAPIIV VGTTSLGTYI VLEATLSFLG IGLPSTTVSW GGDISTARNV LTTNPEVLFY
PSIALAITVL AFIMMGDAVK DALDPKSRKA
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