| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0486 |
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| Symbol | |
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| ID | 8708938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 530279 |
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| End bp | 531907 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482600 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_003373727 |
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| Protein GI | 283782973 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.410451 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAATA AGGCTTTGGC TTTCGTTGCT GCTGCCTGCT CGCTGGCAAT GTTACTTGGT
GGCTGTGGCT CTTCCGCTAA GAATGCACAA ACAAACGGTG GCAAGGTTAT TATTACCGTT
TCAAACTCTG AGCCACAAAA CGAATTAGTC CCTGGAAATA TTAACGAAAA TGCTGGCGCT
CGTCCTGCCA TGTTGGTTAA TTCCACGTTG GTAACTTTCG ATGAAAAAGG TAATCCTGTG
AATGAGGATG CTGAAAGCAT CACTCCAAAT GCTGATGCTA CCCAGTACAC CGTGAAGGTT
AAGAAAGGAA AGAAGTTCAG CGATGGCACT CCTATTACAG CCGAAAGCTT TGTGAAAGCT
TGGAGCTTCG TCGCTAACGC TAAGAATGCT CAGAAGTGTG CTTCCTTCTT CCAAACCATT
AAGGGTTATG CTGATTTGCA GAAGGATGGT ACTAAGGGTG ACGAACAGCT TTCTGGTTTG
AAGGTTGTTG ATGAAAATAC TTTTACCGTT GATTTGGAAC AGCCAGATTC TGTATTCCCA
ATTAAGGTTG GCTACTTGGC ATTTGCTCCA CTTCCGGAAT CCTTCTACAA GGATCCAAAG
GCTTATGGCG AAAAGCCTGT TTCTTCTGGT CCATACTTGT TCAAGTCTTG GGATCACAAC
AAGCAGATTG AAGTTGTGAA GAACCCAGAT TACGATGGTC CACGTAAGGC TCAGAATGAT
GGCGTAACTT TCAAGGTTTA TACAGATGGT AACGCTGCAT ACCGCGATGT GCAGGCTGGA
AACCTCGATA TGACTGATAA TATTCCAGAT ACCCAAACTA AGACTTTCCA GAAAGATACA
ACTGTTAAGG CTTACAACCG TCCAGGTTCT GTAATCCAAC AGTTCACTAT TCCTTCAAGT
CTCCCACACT TCGATGTAAA GACTGAAGAA GGTAAGCTTC GTCGTCAAGC TATTTCTATG
GCTATAGACC GTAAGGTGAT TATCAACAAG ATTCTCAATG GCACTGCTTC TCCTGCGAAC
GAATTTACTT CTCCATTGAC TCCAGGCTAT AAGGCTGATC TTAAGGGTCA TGAGAACGTA
GAATTTAATG CGAAGAAAGC TAAGGAACTT TGGGCTAAGG CAGATAAGAT TTCTAAGTAT
GATGGATCTC TTACTTTCTC CTACAATGCC GATGGAAATG CAAAGTCTGT GTTTGATGCT
GTTGTGAATT CCCTCAAGAA TAATCTCGGA ATCAAGGCTG AGACCACTCC AATTCCTACA
TTCCAGGAAT TCCGTAATGC TTGCGCTAAG CGTCAGATTA AGGGTGCATG GCGTGCAGGT
TGGATACCAG ATTATCCAAG TGCAGAAAAT TACTTGACTC AGGAATTTGC TTCCGTTGCA
GCTGATGGCA ATGGTTCCAA CGAAGGTGAT TATAAGAATC CAAAGTTCGA CGATTTACTT
AAGAAAGCTG CATCTGCTAA GCCAGGAGAG GCTATTAAGC TCTATCAGCA AGCAAACGAA
ATCCTTCTTG AGGATCTTCC ATCTGTCCCA TTGTTCTACT CGAACGCTAA GGCTGTGATG
GTTCCAACTT TGAAGGGCTT CACAATGGAT TGGCAGAATA TGCCGCTGTA CTATCAGCTT
CACAAATAA
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| Protein sequence | MKNKALAFVA AACSLAMLLG GCGSSAKNAQ TNGGKVIITV SNSEPQNELV PGNINENAGA
RPAMLVNSTL VTFDEKGNPV NEDAESITPN ADATQYTVKV KKGKKFSDGT PITAESFVKA
WSFVANAKNA QKCASFFQTI KGYADLQKDG TKGDEQLSGL KVVDENTFTV DLEQPDSVFP
IKVGYLAFAP LPESFYKDPK AYGEKPVSSG PYLFKSWDHN KQIEVVKNPD YDGPRKAQND
GVTFKVYTDG NAAYRDVQAG NLDMTDNIPD TQTKTFQKDT TVKAYNRPGS VIQQFTIPSS
LPHFDVKTEE GKLRRQAISM AIDRKVIINK ILNGTASPAN EFTSPLTPGY KADLKGHENV
EFNAKKAKEL WAKADKISKY DGSLTFSYNA DGNAKSVFDA VVNSLKNNLG IKAETTPIPT
FQEFRNACAK RQIKGAWRAG WIPDYPSAEN YLTQEFASVA ADGNGSNEGD YKNPKFDDLL
KKAASAKPGE AIKLYQQANE ILLEDLPSVP LFYSNAKAVM VPTLKGFTMD WQNMPLYYQL
HK
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