| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0452 |
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| Symbol | |
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| ID | 8708881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 495785 |
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| End bp | 497017 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482567 |
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| Product | amidohydrolase |
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| Protein accession | YP_003373696 |
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| Protein GI | 283782942 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1473] Metal-dependent amidase/aminoacylase/carboxypeptidase |
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| TIGRFAM ID | [TIGR01891] amidohydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.598311 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCAAC TTACGGCAGT TCAGAAAATA TTATCCGATT TAGATGAAAC CCAAAGAGAA
CGAGAAAAAC AATACAAATA CTTTCATCAA CATCCTGAAC TGTCAATGAA AGAAGATCAT
ACAGCTCAAA CAATTATTGA TATTCTTAGC GAAGCTGGGA TTGAAACAAA GCGAGTTGGA
AAAACAGGCG TTGTGGCAGA GATTAAAAAC GGCGAAGGTC CTGTTGTTGC TATGAGAGCG
GATATCGATG CGCTTCCAAT TAAAGAAAAT TCAGGAAAAG ATTACACTTC AACAGTTAGT
GCGCAAGACG AAAATGGCAA AACGGTTGGA GTTTCACACG CTTGCGGTCA CGATTTTCAT
ATTTCCAGCC TACTTGGTGC CTTGAAGGCT TTTAATGAGC ATAAAGATGC TTGGAAAGGA
ACGTATATTG GCGTTTTTCA GCCTGGAGAA GAAACAGCTC AAGGCGCAAA AGACTTGGTG
GAAAATGACA TTATGAGCAT GATTGCAAAG CCTGACGTTT ACCTTGGTCA GCATGTGTTG
GGTGCTATTC CTGCAGGAAC AGTCGGTATT CGTTCGGGCG CGTTCTTAAC TACTGCAGCT
TCGATTCGCG TGCACATTTT TGGTAAAGGT TCGCATGGTT CTATGCCTGA GTTGAGCGTT
GACCCGGTGG TTGTTGCTTT GTCAATTGTG CTTAAATTGC AGACGATTGT TTCTCGCGAA
CTTGCAGCTA AAGATTACGC AATTGTTACA GTTGGCGCGC TTAATGCAGG AAGTAAGTCG
AATATTATTC CTGATGATGC CGAGCTTTTA ATTAACACAA GAACTTATAG CGAAGATACT
CAAAAATTTG TGCACAATGC TATTGAACGA ATTGTGCGTG GAGAGTGCGA GCTTGCAAGA
TGTCCTAAAG AACCAGAGTT TACGTATTAT GATTGCTATC CGCTTACAAA TAATGATCAG
AATGCGTCTT TGCGCGTGCG TAAAGCTTTT GATGAATACT TTGGAGAAGA TTCTGTAGAT
ATTTCGCGCG CTTCTGCTTC GGAAGATTTT TCTATAGTCG CGAACGCTTT TAAAACTCCT
TACGCTTACT GGGGCTTAGG TGGTTTTGCG GATATGCAGA ATGCTCCTGG AAATCACAAT
CCGGCATTCG CCCCAGATTT GCAGCCCACT CTTAATCGCG GATTAGAAGC TGCAGTTGTG
GCAGCTTGCG CTTGGCTCAC TAGCGAAAAG TAA
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| Protein sequence | MLQLTAVQKI LSDLDETQRE REKQYKYFHQ HPELSMKEDH TAQTIIDILS EAGIETKRVG
KTGVVAEIKN GEGPVVAMRA DIDALPIKEN SGKDYTSTVS AQDENGKTVG VSHACGHDFH
ISSLLGALKA FNEHKDAWKG TYIGVFQPGE ETAQGAKDLV ENDIMSMIAK PDVYLGQHVL
GAIPAGTVGI RSGAFLTTAA SIRVHIFGKG SHGSMPELSV DPVVVALSIV LKLQTIVSRE
LAAKDYAIVT VGALNAGSKS NIIPDDAELL INTRTYSEDT QKFVHNAIER IVRGECELAR
CPKEPEFTYY DCYPLTNNDQ NASLRVRKAF DEYFGEDSVD ISRASASEDF SIVANAFKTP
YAYWGLGGFA DMQNAPGNHN PAFAPDLQPT LNRGLEAAVV AACAWLTSEK
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