Gene HMPREF0424_0294 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0294 
Symbol 
ID8709203 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp316272 
End bp316928 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content42% 
IMG OID646482412 
Producthypothetical protein 
Protein accessionYP_003373549 
Protein GI283782795 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGAAAT CGAATGCTTC AAGTATGAAT GCTTCAAAGA TGGGTGCGTT GAATATGAAT 
TCCTCAAGTG TTAATAATTC ATCACACAGC AAATTATTAG TTGTGTTGAC TTCAGCTGTA 
GTAATTGTGG TTTTGGCTCT AATTTCAGCA TTTATGTGGC CAGGTTGGGC ATTGAATCAC 
GAAAATGTTG CGAGCAAAAA TCATATGGTA ATGCCTAAAA CGCCTTCTAT GCCATCGAAA 
CCTTTGCCAG CATCTTCTAC GGCATTGCTT AAGGCTATGC CTGATAGCGT ACTTGATTTC 
GCTCGTGTTG ACGCTATACC TAGTGCAACT TGGACTGAAT CGTCGCCTTT GGAGGAATAT 
TCTGTTAAGT ACTCAACTGG TCAGCCAGAT GGGGAAGTGT CTGTAACTGT TGCTCAATGG 
TCGAATCGCG ATTCTGCGAA CAAACAGTAT GAAGCGTTAG TTGATGGACT TAAGGGTTCT 
GAAATCGCAA GTGGAAAAAT TCAAGTTTCT GGCAAGGCTG CCGGTAGCTA TGTGTTGCGA 
AATGATGAAA ATGATAAATC ACAGGCTAGT GCATTGTGGC AGAACGATAC CGCTGTTTTT 
GAAGTGAACG GCGCAAAGCA AGCAGTAGAG CGTTTTTATC ACAGATTCCC AATGTAA
 
Protein sequence
MSKSNASSMN ASKMGALNMN SSSVNNSSHS KLLVVLTSAV VIVVLALISA FMWPGWALNH 
ENVASKNHMV MPKTPSMPSK PLPASSTALL KAMPDSVLDF ARVDAIPSAT WTESSPLEEY 
SVKYSTGQPD GEVSVTVAQW SNRDSANKQY EALVDGLKGS EIASGKIQVS GKAAGSYVLR 
NDENDKSQAS ALWQNDTAVF EVNGAKQAVE RFYHRFPM