| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0229 |
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| Symbol | |
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| ID | 8709164 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 256512 |
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| End bp | 260270 |
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| Gene Length | 3759 bp |
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| Protein Length | 1252 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482348 |
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| Product | hypothetical protein |
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| Protein accession | YP_003373490 |
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| Protein GI | 283782736 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGATA CAAACAACGT GGAGCAGGAT TCGTCAGAGC AAGTTTTTAC TGATACAGTA
GTTGAAAATA CTACGTCAGA AGGTGATTCT TTAGAAAAAT CTGGCTCTAA CAATACCAAC
AGCGCTCGTA CTAACGCTTT ACAACATATA GTTGGGTGGA AGCAGCAATA TCAGGCTCAG
CTATCTCCTT CTCCACTAGA AGATATAACG CAACTTGCTG CACAATTAGA GTTGACGCAT
GCTCATCCTT CCGGAATTGC GCAACTTTTT GCAAGCGGAA AAGTAACATT AAAATCTTTA
TTCCGAGACG CTGGAATGTT GCGGGCTGCT GGGCGAAGGC TAGATCGAGT TTTTGAAGAT
AGAGACGCAA AAGCACACGA AAGTGGCGTT TCCGAACTTT CTTTAATAGT TGGTGTTGCA
TCGTGGAATG GCAACCATGT GCCTGTTCTT ACGTATCCTG TGAAAGTTGT TCGTGACACT
AATCAAGATG AGACCTCCGC CACTATTTAT TTCTCTGGAA GTGTTGGGCT GAACAATTCG
CTTGTGTCGC GTTTAAGTGA GCGTGGTGTT CAACTTAGGG AAGATGTTTT ATTCGACGGA
TCTCAATATG AAAGTGGAAC GCCAGAAACT TCTGTAGTGT TTGATGCTAT TTGTAAGCAA
GCTCGCTCAG CTTTTACAGA TTTTGATATT GAGCGCGATA TTATACTTGG CTGCTTTACA
GATGCTGGTT CGCGTTTTGT AGCAGAAAGT GAACAAATTA TTGACGCTTT GCAATCTGGC
AATGTTGGAA ATGCGATGAT TGACGCTATG GCTGGCGATG ATCGAGCTAT TCATAAGCTT
CAGTCTGCAA ATAAGCTAGA ATATAGTCCT TTCGACGCAG ATCCTCATAG CGAATGCGAA
GTTGGTGAAG TAGATAACGT TGTGCGTTAT GCAGCGGAGC TTGTTGCTTC TGGAAATTCT
CTGTTCGTGG ATATTGATTC GGGCTCAGAT TCAGCTGCGA TTGCTGCTGC GATTGCTTCT
CGTTCTGTGA TTGCAGGACA TTCTGTGTTG TATGTGCCTA ATGTTGTTGA GCAGCAGAGG
CGTTTCCGTT ACACGTTGAA TACGCATGAA ATTTCCTCAT TAGCATTAGA CGTTGCGGAT
GGTCATATTG CTAAGCATGT CGATGCGCAG TTGATTGCAG CAGTTGGTGC TAGACATAGT
ATTGCGACTT CACGATTTGA GCAGGTTGCA GATGAGTTGG TTGGAGTGCG TTCTCGCCTT
ACTCGTTATT TAGGCGATCT TCATGGTATC AACGAAACTT GGGGAGTATC TGCATATCAA
ACAATCCAGA ATCTTGCAGC AATTGCAATG TTTCCAACCC ATCCGTCTAC GCATGTGCGT
TTAGATGTTT CTGCAGCGCA CGCCATGACC GGTCATATTG AAGAGTGGTC GAAAAAATTC
CACCAAGCCG ATGAGCTTGG AGAGTTTAGG ATAAATCCTG AAGATACTCC TTGGTTTGGC
GCGTCGATAT TTGACGAAAA TGAAGCTATA TCTGTATATC AGCGTGTTGT AGACGTGCTT
CTTAAGCTTC TTCCAGCAAC TCGAGAACAA GTTAAAAGCA CTGTGCAAAG CTGTGGTTTC
CCTGTGCCAA CAACAGCTCG TGAGTGGAGT CGTCAAGTTA CAGTTCTCAA AAATTTGCGA
CGTGTACTTG ACGTATTCCA GCCTGAAATT TTTGAGCGCG ATTTAGATGC AATGATTGAA
GCGAGTAAGC CGAAAGTTCA GCGTAAAGCC GAAGGCACAA TTATGGGCTT CTGGGAACGT
AGACATCATG TTCGAGAAGC GCGCAGCTTG CTAAGAGTTG GAGCTAAAGT CGATGATTTG
CATGAGGCAT TAAAGATTGT TGCGCAGCAA GCAGCTCAGT GGCGTACTTT CGTGCCTCAT
GGCGGATGGC CTGTTTTGCC GCCAAAATTG GATGATATTG TAAATACTCA AGAATTATTA
GCAAGGCATT TAGTTGCTCT TGATGCAGTG TTAGCAACAA CTCTTAAGGG CGCGGATCTT
GAAAATATTG AATTTGCGCA GCTTGAAGCT CGTTTGCAAG ATTTGCATGA CGACAGAGCA
TCTCTAGATA CTCTCCCTGG TCGTTGCAAT TTGGAGCGTG AGTTCAGCAA AGCGGGCTTA
TCTGATTTAG TTAGCGATTT GCGTCGTCGC AACGTTACAG GTAATGCAAT TGACGGTGAG
TTGCAATTGG CTTGGTGGAC TACTGTTTTT GAAGATATCG TTAATTCTTC TGCAATTATT
TCTCACCAAG ATGGCTCCGC AATGCAAGAT GTCTCTGATC GATTCGTGCA AGTTGATACA
GAACATGTGC GTTCAATCGG TCCAATGGTT CAGCAAGAAG CTATGAGGCA TTTGTGCGAT
TTATTGTTCT CGCACACGCA AGAAGCTAAT CAGTTACATA CTATGCTTGC AGGAAACCGT
TCTGGAATTA CTTTTAATAA ATTATTGCGC AATTATGCGG AACTTGTGTT GGCTGCGAAA
CCAATACTTG TAGCTATGCC ATCTACTCTT ACTATGATGA CTCCGTTGAG ACCTATTGCA
GATACTGTAA TAATTGATTC GGCATCTCAT ATATCAAATA TTGAGTTGCT ATCTATTTTG
TCTCGTGCTC GTCAAGTAGT AGTTTTAGCG CATAAGCAAA CAGTAAGTTC TGAAAGTTTG
CGTTCGCTTA TTTCATTACT ACCATCTGTA ACAGTAGTTT CTAGAGCAAC AAGGCGCTCG
CTTCGTTTAG CGCGATTCTT GGAAGAACAT GGTTACGGAA AGTTGCGTCA CGACGTTCCT
GTTGAGCGTT TGCAAGGTAA AGTTCGTTTG CATCAAATTG AAGCAACTGG AGTTCCAGTA
ATGTCTTCTG GGCTTATTGA AAGCAGCCAG CGTGAAATTG ATGAAGTAGT TGAGCTTATT
CGTCAGCGTG CGAATACGTT TACGGTTGTT CCTTCAAGCT ATGTGCTTGT CGTAGTTACG
TTGACAAACG TGTTCCGCAG TCGTTTAGGA GCAGAGTTGA AGTCTTTGTC TATTAAAGAC
GAAAACATGG CTAGATTCTT GCGACATGTG AGACTTTTGG GCGTTAATGA AGCTTCTGGA
GCAATAGCAA CAGATGTAAT TATGTCGCTT TGCTATGCAA AAACATCTCA TGGCAGACTT
CTTCAGCAGT TTGGATTGCT TGAAGAAGAA GGTGGAAGCA GTATGCTTCT TGACGCTTTG
GCTCTAGCTC GTCGTCATCT AGATATTGTT AGTGCGTTTA CATCTAAAGA TATGGAAGAT
GAGCGTTTGC ACCAAGATGG TCCAAAGCTT TTGAAGAACC TTTTGCAATG GGCTGAGAAG
TTAAGTGATA AGCCGCTTCG TCCAGAAGAT GCCAACGATG TTGAAGCGCA AATTGCTGCA
GAAGCTGCAC AAAGAAATGT GCTATTTACT GATTTAGCTG AGCGTATTCG CTCGCGTGGA
TTAAAAGTTG CAGTCAACTA TGGCTTCGAT AATGGCGTTA GAATTCCTCT AGTAGTTGGA
CTTGCGGACA AGTCATTTGC TGTTGCTGTG CTTACGGATG ATGCGCAATT TATGAGCGTG
CAATCAACTC GTGAACGTCA TCGCATGATT ATTCAGGATT TGGAATCCTT GGGCTGGTCA
GTTATGACAG TGTGGAGCGT TGGAGCTTTT GTCAATCCTG AAAAAGAGGT TGACCGTGTT
GTTTCTCGTC TCGGGGAATT GTATGGTGAC AACGAATGA
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| Protein sequence | MSDTNNVEQD SSEQVFTDTV VENTTSEGDS LEKSGSNNTN SARTNALQHI VGWKQQYQAQ
LSPSPLEDIT QLAAQLELTH AHPSGIAQLF ASGKVTLKSL FRDAGMLRAA GRRLDRVFED
RDAKAHESGV SELSLIVGVA SWNGNHVPVL TYPVKVVRDT NQDETSATIY FSGSVGLNNS
LVSRLSERGV QLREDVLFDG SQYESGTPET SVVFDAICKQ ARSAFTDFDI ERDIILGCFT
DAGSRFVAES EQIIDALQSG NVGNAMIDAM AGDDRAIHKL QSANKLEYSP FDADPHSECE
VGEVDNVVRY AAELVASGNS LFVDIDSGSD SAAIAAAIAS RSVIAGHSVL YVPNVVEQQR
RFRYTLNTHE ISSLALDVAD GHIAKHVDAQ LIAAVGARHS IATSRFEQVA DELVGVRSRL
TRYLGDLHGI NETWGVSAYQ TIQNLAAIAM FPTHPSTHVR LDVSAAHAMT GHIEEWSKKF
HQADELGEFR INPEDTPWFG ASIFDENEAI SVYQRVVDVL LKLLPATREQ VKSTVQSCGF
PVPTTAREWS RQVTVLKNLR RVLDVFQPEI FERDLDAMIE ASKPKVQRKA EGTIMGFWER
RHHVREARSL LRVGAKVDDL HEALKIVAQQ AAQWRTFVPH GGWPVLPPKL DDIVNTQELL
ARHLVALDAV LATTLKGADL ENIEFAQLEA RLQDLHDDRA SLDTLPGRCN LEREFSKAGL
SDLVSDLRRR NVTGNAIDGE LQLAWWTTVF EDIVNSSAII SHQDGSAMQD VSDRFVQVDT
EHVRSIGPMV QQEAMRHLCD LLFSHTQEAN QLHTMLAGNR SGITFNKLLR NYAELVLAAK
PILVAMPSTL TMMTPLRPIA DTVIIDSASH ISNIELLSIL SRARQVVVLA HKQTVSSESL
RSLISLLPSV TVVSRATRRS LRLARFLEEH GYGKLRHDVP VERLQGKVRL HQIEATGVPV
MSSGLIESSQ REIDEVVELI RQRANTFTVV PSSYVLVVVT LTNVFRSRLG AELKSLSIKD
ENMARFLRHV RLLGVNEASG AIATDVIMSL CYAKTSHGRL LQQFGLLEEE GGSSMLLDAL
ALARRHLDIV SAFTSKDMED ERLHQDGPKL LKNLLQWAEK LSDKPLRPED ANDVEAQIAA
EAAQRNVLFT DLAERIRSRG LKVAVNYGFD NGVRIPLVVG LADKSFAVAV LTDDAQFMSV
QSTRERHRMI IQDLESLGWS VMTVWSVGAF VNPEKEVDRV VSRLGELYGD NE
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