Gene HMPREF0424_0226 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0226 
SymbolrplJ 
ID8709831 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp253283 
End bp253804 
Gene Length522 bp 
Protein Length173 aa 
Translation table11 
GC content54% 
IMG OID646482345 
Productribosomal protein L10 
Protein accessionYP_003373487 
Protein GI283782733 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0244] Ribosomal protein L10 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAGGC CCGAAAAGGA AGCGGTAGTT GCCGAGCTTA CGGAACTTTT CCGTAACGCA 
GACGCTATCT ACCTCACCGA GTACCGCGGG CTTACCGTTC CGCAGATTTC TACTCTGCGC 
GAAAAGCTAG GCCGCGATAC TTCCTACTCT GTGGCTAAGA ACACGCTTGC TCGTATTGCT 
GCTAAGGAAG CGGGCATTGA AGGTCTTGAC GAGCTTCTCG CCGGCCCAAC TGCAGTCACC 
TTCGTTAAGG GTGATTTCAT TGAGGCTGCT AAGACCTTGC GTGATTTTGC CAAAGAGAAT 
AAAGCCCTCG TCATTAAGGG CGGTTTCGCA GATGGAACCG TTTACGATGC CGAAGGTGCA 
AAGCAGCTCG CCGACTTGAA GTCGCGCCCA CAGTTGCTTT CCGAAATGGC CGGCGCGCTC 
AAGGGCACCA TGTCCAAGGC CGCTTACCTG TTCAACGCAT TGCCAACCAA AGCAGTTCGT 
ACAATCGACG CTTTGCGCGA GAAGCAGGAA AAGGCCGCTT GA
 
Protein sequence
MKRPEKEAVV AELTELFRNA DAIYLTEYRG LTVPQISTLR EKLGRDTSYS VAKNTLARIA 
AKEAGIEGLD ELLAGPTAVT FVKGDFIEAA KTLRDFAKEN KALVIKGGFA DGTVYDAEGA 
KQLADLKSRP QLLSEMAGAL KGTMSKAAYL FNALPTKAVR TIDALREKQE KAA