Gene HMPREF0424_0159 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0159 
Symbol 
ID8709828 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp180292 
End bp180897 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content41% 
IMG OID646482278 
Producthypothetical protein 
Protein accessionYP_003373423 
Protein GI283782669 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.180291 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAACAA ATAGAACAAA AACAAAAAAG CTTTCGGTTT TGAATGCCCC TAGTAGCAAA 
CAAAACCGAA AGCAACACAT TCAACACTCA AAACCCCCAC ACGCACAACA AACGCCAACA 
CAAATCAGAG ATAAAAATGT TCTTGCTTCT ATTAGGTTGA TGGTTGATGC AAGCCCTCAG 
TTGCGTAGTA AAAAGAAGCT TATTGAAGGG TTTATTGCGC AGCTTAACGA AAATGAGCTT 
GATAAGCTTG CGGATTCTGG AGGTAACATT ACTGTTTACG ATTCGAACGG CAACAAGGTG 
AGTATTGTTG ATTGCTGGAG CGAGTATGTT GAGCAAAAGT ATAATCATGA CTTGGCGCAA 
CTCGTGCAAA GCGAAGGATT AAACGATGCT TTGACTCGCA AGTTTATGGA GAAATCTTTT 
AGTGTTGGCG AAGTGAGTGA GCTTGGCACA GACATTAATG ATTTAATGCC TAGAATGAGC 
AGATTTGGCG CTGCGGCTAA GGCGCGCGCT GAGAAGAAAA GTCGCATTGT GGAAAGTATG 
AGAAACATGT TTAATGAGTT TGTTGGGCTT ATTGGCTTTT CTCAATACGA TTCGCAAAAA 
GATTGA
 
Protein sequence
METNRTKTKK LSVLNAPSSK QNRKQHIQHS KPPHAQQTPT QIRDKNVLAS IRLMVDASPQ 
LRSKKKLIEG FIAQLNENEL DKLADSGGNI TVYDSNGNKV SIVDCWSEYV EQKYNHDLAQ 
LVQSEGLNDA LTRKFMEKSF SVGEVSELGT DINDLMPRMS RFGAAAKARA EKKSRIVESM 
RNMFNEFVGL IGFSQYDSQK D