| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0146 |
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| Symbol | atpA |
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| ID | 8709145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 166570 |
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| End bp | 168231 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646482265 |
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| Product | ATP synthase F1, alpha subunit |
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| Protein accession | YP_003373410 |
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| Protein GI | 283782656 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0056] F0F1-type ATP synthase, alpha subunit |
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| TIGRFAM ID | [TIGR00962] proton translocating ATP synthase, F1 alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.445327 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGAAC TATCTATTGA TCCCGCCCTG ATACGCAAGG CACTCGACGG GTTCGTTGAC
TCGTATAAGC CTACCGACAT GCCAACGCAA GAAGTTGGCT ATGTTGTTAC GGCTGGTGAC
GGCATTGCGC ACGTAGCTGG ATTGTCCGGC TGCATGGCAA ACGAGCTGCT CACATTCGAG
AACGATACCT TGGGTCTTGC GTTCAACCTT GATGCGCACG AAATCGGCGT CGTTATTCTC
GGCGATTTTA CAGGCATTGA GGAAGGGCAG GAAGTATACC GCACAGGCGA GGTGTTGTCT
GTACCGGTTG GTGACGCTTA TCTTGGTCGT ACTGTGGATC CGTTGGGTAA TCCAATCGAT
GGTTTGGGTG CGATTGAGTG CAGTGAGCGT CGTATTCTTG AAGCCCAGGC TCCAGACGTT
ATTCACCGTC ATCCAGTCGA TGAACCATTG TCTACTGGTT TGAAGGCTAT TGACGCAATG
ACGCCAATAG GTCGTGGTCA GCGCCAGTTG ATTATTGGTG ACCGTCAAAC AGGTAAGACT
GCAATCGCAA TAGATACGAT TATTAACCAG CGTGCTAACT GGGAAACTGG AGATCCAAAG
AAACAGGTTC GCTGCATTTA TGTAGCAATC GGTCAAAAGG GTTCTACTAT TGCTTCAGTG
CGTCAAAGCC TTGAAGAAGC AGGAGCTATG AAGTACACCA CAATCGTGGC AAGCCCAGCT
TCTGATTCTG CAGGTTTTAA ATACATTGCA CCTTACACTG GTTCTGCAAT CGGTCAGCAC
TGGATGTATA ACGGCAAGCA CGTTTTGATT GTTTTCGATG ATTTGTCGAA GCAAGCAGAA
GCATACCGTT CAATTTCCTT GCTTTTGCGT CGTCCACCTG GGCGTGAAGC TTACCCAGGC
GACGTGTTCT ACTTGCACTC TCGTCTGCTT GAACGTTGTG CTAAGCTTTC TGACGATTTG
GGTGGCGGTT CTATGACCGG TCTTCCAATT ATCGAAACCA AGGCAAACGA TGTTTCTGCA
TACATTCCAA CCAACGTGAT TTCTATCACC GATGGTCAGA TTTTCTTGCA GTCTGATTTG
TTCAACGCAG GTCAGCGTCC AGCAGTAGAC GTTGGTATTT CCGTGTCTCG TGTTGGTGGC
GCAGCTCAGG CTAAGGCTTT GAAGAAAGTC TCCGGCATGT TGAAGATTTC CTTGGCTCGT
TACAAGTCTT TGGAATCCTT CGCAATGTTC GCTTCTGATT TGGATGCAGC CTCAAAGGCG
CAGCTTACTC GCGGTGCTCG TTTGACTGAG CTACTTAAGC AGAAGCAGTT CTCTCCTCGA
GCAATGGAGC AAGAAGTTGT TTCTGTGTGG GCTGGTACTC ATGGCAAGCT TGACGATATT
CCTGTGAAGG ATGTGTTGCG TTTCGAAAGC GAATTGTTGG ATTACTTGGA TAAGGGAACC
GACATTTTGC AAGTAATTCG CGATACTGAA GACTTCACTA AGGAAACTGA AGCTAAGCTT
GATGCAGCCA TTGATGATTT CCGTAGGACG TTTAAGACAT CTGCTGGCAA GCCTTTGATT
GTAAAGGATT CTTTGCCGCC GGCTGAAAAC CCTGCTCCTG TTGAGAAGGA ACAGCTCGTA
GCTAAGCCGA AAGCAGACAG TCGCGAGCCT GAGGGGAAGT AG
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| Protein sequence | MAELSIDPAL IRKALDGFVD SYKPTDMPTQ EVGYVVTAGD GIAHVAGLSG CMANELLTFE
NDTLGLAFNL DAHEIGVVIL GDFTGIEEGQ EVYRTGEVLS VPVGDAYLGR TVDPLGNPID
GLGAIECSER RILEAQAPDV IHRHPVDEPL STGLKAIDAM TPIGRGQRQL IIGDRQTGKT
AIAIDTIINQ RANWETGDPK KQVRCIYVAI GQKGSTIASV RQSLEEAGAM KYTTIVASPA
SDSAGFKYIA PYTGSAIGQH WMYNGKHVLI VFDDLSKQAE AYRSISLLLR RPPGREAYPG
DVFYLHSRLL ERCAKLSDDL GGGSMTGLPI IETKANDVSA YIPTNVISIT DGQIFLQSDL
FNAGQRPAVD VGISVSRVGG AAQAKALKKV SGMLKISLAR YKSLESFAMF ASDLDAASKA
QLTRGARLTE LLKQKQFSPR AMEQEVVSVW AGTHGKLDDI PVKDVLRFES ELLDYLDKGT
DILQVIRDTE DFTKETEAKL DAAIDDFRRT FKTSAGKPLI VKDSLPPAEN PAPVEKEQLV
AKPKADSREP EGK
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