| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_3116 |
|---|
| Symbol | |
|---|
| ID | 3740929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 3513711 |
|---|
| End bp | 3515813 |
|---|
| Gene Length | 2103 bp |
|---|
| Protein Length | 700 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637780404 |
|---|
| Product | tetratricopeptide TPR_4 |
|---|
| Protein accession | YP_386055 |
|---|
| Protein GI | 78224308 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1729] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 80 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACAGAT TACTGAAAAC AGCCCTCGGC TGCGCCCTCC TGCTCCTGAC CATCCTGGCG
ACAGCGGATC CTGGCCGGGC CGACGACCGG AACCGTCTCC GCCGCATTGA CGTCAGGCCC
CGAAGCGGAT TCACGCGGCT TATGCTCAAG CTCGATCGGG AACCGGCTTA TACGCTGACC
CCTCTTGCGG GAAACCGGGT GCGGGTCACG CTGCGGGATA CCGACGGCGC CCGATGGAAG
CGGCTCCGCT CCTACAGCGA CCCCAACATT GCCGGCTGCG CCGTTGCCAG GCGTCGGGGG
GATCTCCTCG TCACCGTGGG TGTCAAAGGT GATCCCCGCG GAGTGAGGGC CATCGCCATG
CCGGGAGTGG CGGCGCTCAC CCTCGACGTG GGGAGCCGCC TGGCCCCTTC CCGCACCTCT
CCCTTCGCCC AGGGGCGTGA TGGAATCAAG GTTGGGGTCG AGCAGCTTGT CTCGCGCTTC
GATCCTCCGG TGAAGAGCGA CATCCCCTTT GTACCCACCG ACCGCCGCGT CCTCCAGAAA
GTGCTCACCC CCGAGGAGGT GGATATCGTT CTCGCCGGCG AGGCTGCCCT CTACCGGGGG
CAGGGGAGCG AGGCCGAAAG GATATTTGCC CCCATCGTCA CCGTTCAATC GCCGGTGAAA
GCCCTGGCCT ACTACCGTCT TGGCGAGGCC CGCACCATGC TCCAGAAATA CGGCGAGGCC
CTGCGGGACT TTCGGGAGGG GGAAAAGCTC CTGCCCGAGT TCCTGGCCCA GTCGCCAGGA
ACGGCCTTTG CCTACGCCGA TGCCGTAGTC CGCAGCGGCG ACCTGGAGGG GGGGCGCAGG
ATGCTGGGAC GCCTCATTGC GAGCCTTGCC GACAAGAAGT TTGCGCCGGT GCTCCTGGTG
AGGCTGGCCG ACATCCTTTC CCGCCAGGGG AAGGAGATGG CGGCAGAGGC CATCTACCGG
ACTGTCGCGG AAAACTTCCC GGACAACAAG GCGAAGTGGC AGGCACGGAT GAAGCTTGCC
GACCGCAAGT TCATGACGAT CGAGCCGGCC ACCTTCAGGG GGCTCGTGGA CGAGTATCTG
GAGATCAACC GGAACAGCGA CTTTTCCCTC CGTGAGGAGT CGCTCTTCAA GGCGGCGCTT
CTTACCGCCC TCTTCGGCGA GGCCCCGGAC GGCTTCGCCC TCGTCTCCGA GTACGAAAAG
AAGTTCTCCC GGGGCACCTA CATAAGCGTC GCCCGGGGGA TGCGGGAAGA GCTCATCGTG
CCGATGGTCC GGGTGTTGAT TCAGGCCAAG GATTTTCCTG CCCTCATCAC GCTGGCCCAG
GAGAACCGGG ACTACCTGGG GAGGTGCATC GCCGATCCCG ATTTCGTGCG CAGCCTCGTC
ATCGCTTTTG CCGATCAGGG ACGCTTCTCG GAAGAAGCGG AGCTCTTCTC GTACCTGGCC
GGCAAGGATT GGAGCGCCCC CCAGGCACCC GAACTCTACC GTCGGATCAT CGAGGCCGCG
GAGCGGACCG GCGACATCCC CTTGCTGGAA AATTCAGCCG ACAACTTTCT GAGGCGCTTT
CCCGATCATC CCCTGGCCCA GGGGTACCGG GAGCGGGTGG CGGCCCTCGA CTACAGCCGG
GGAAATCTGC CCAAGGTAGC GGCGCGGCTC GCCCCCCTCC TGACGGGCAA GGGGCGTCCC
GATGACGTGG AAAGCTACTA CATCCTTGGC AAATCCCTGG AAAGCGCGGG CAACAAAAAA
GACGCGGAGC GGGCCATGAT CCTCTTCCTG TCAGAACTCC GACAGCGGGG GGGGACGTCG
GAACTGGCGC CCGACGCCCA TTACGTGGCT GCCTCGGCCC GGCTTGCGAG GGGTGACCGG
AAAGGTGCCA TGGAACTCCT CCGGGCCGGG AGTACCGCGG CCCCCGAGGC CCAGCGGGAC
CCGTTCCTCT ACAAGATGGG GGAGATTGCC CGCCTTGAGG GGCGCAACGA CGAGGCCGCC
GGCCACTTCA AGGCGGTTGC CGACAAGGGG AAAGACCCCG TCTGGCAGCA GATGGCCGCC
CAGGCCCTGG CCGACATGGA GCTGAAAAAG AAACTGGCGA CGCAGGTGAA GTTGTCAAAA
TAG
|
|---|
| Protein sequence | MNRLLKTALG CALLLLTILA TADPGRADDR NRLRRIDVRP RSGFTRLMLK LDREPAYTLT
PLAGNRVRVT LRDTDGARWK RLRSYSDPNI AGCAVARRRG DLLVTVGVKG DPRGVRAIAM
PGVAALTLDV GSRLAPSRTS PFAQGRDGIK VGVEQLVSRF DPPVKSDIPF VPTDRRVLQK
VLTPEEVDIV LAGEAALYRG QGSEAERIFA PIVTVQSPVK ALAYYRLGEA RTMLQKYGEA
LRDFREGEKL LPEFLAQSPG TAFAYADAVV RSGDLEGGRR MLGRLIASLA DKKFAPVLLV
RLADILSRQG KEMAAEAIYR TVAENFPDNK AKWQARMKLA DRKFMTIEPA TFRGLVDEYL
EINRNSDFSL REESLFKAAL LTALFGEAPD GFALVSEYEK KFSRGTYISV ARGMREELIV
PMVRVLIQAK DFPALITLAQ ENRDYLGRCI ADPDFVRSLV IAFADQGRFS EEAELFSYLA
GKDWSAPQAP ELYRRIIEAA ERTGDIPLLE NSADNFLRRF PDHPLAQGYR ERVAALDYSR
GNLPKVAARL APLLTGKGRP DDVESYYILG KSLESAGNKK DAERAMILFL SELRQRGGTS
ELAPDAHYVA ASARLARGDR KGAMELLRAG STAAPEAQRD PFLYKMGEIA RLEGRNDEAA
GHFKAVADKG KDPVWQQMAA QALADMELKK KLATQVKLSK
|
|---|
| |