| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1664 |
|---|
| Symbol | |
|---|
| ID | 3740514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 1866142 |
|---|
| End bp | 1869276 |
|---|
| Gene Length | 3135 bp |
|---|
| Protein Length | 1044 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637778949 |
|---|
| Product | hydrophobe/amphiphile efflux-1 HAE1 |
|---|
| Protein accession | YP_384620 |
|---|
| Protein GI | 78222873 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.186908 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 0.57083 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATTTCCC AGTTCTTCAT CGAACGTCCC ATCTTCGCCA ACGTCATCGC GCTGGTCACG
GTCATCATCG GGCTGATCTT CCTGAATCGC CTGCCAGTGG CCCAGTACCC CCAGATCGTG
CCCCCGACCA TACAGGTGAC CGCGCGCTAC CCCGGCGCAA GCGCGGAGGT TGTCGCGGCG
ACCATCGGAG TACCTATCGA ACAGGCGGTG AACGGCGTGG AAGGCTCCAT CTACATGTCG
TCCACCAGCG GGAGTGACGG CTCCTATAAC CTGACCATCA CCTTCGATGT CGGAACCGAC
CTCAATACCT CCCTGGCTCT TGTCCAGAAC CTGGTAAACA CCTCCCTGGC CCAACTTCCG
GGCGGGGCGC AGCAGCAGGG AGTCACCGTA AAAAAAGTCT CGCCCAACAT CCTGCTGGTG
GCCAGCCTCT ATGCGGACGA TGAGAGATTC GAGGAGATCT TCCTCTCCAA CTATGCCGTC
ATAAACCTGC AAAACCCGCT GGCCAGGCTC CCCGGCGTCG GCCAGGTGCG GGTATTCGGC
GCTGGTCCCT ACAGCATGAG GGTCTGGCTC GACGCCAAGA GACTCCAGAG CTTCGACCTC
ACCACAAGCG ACATTCTGAC CGCCATCCAG AGACAGAACG TCCAGGTGGT GGCGGGACAG
CTCGGGGCCC CGCCGGTTCC GGCGAGCCAG AGTTTCCAGT TCACCGTTAC CACCCTTGGC
CGGCTCTCTG ATGTGGGGCA GTTCGAAGAT ATCGTCGTCA AGACCGCAAC CGGCCCGGCT
CCGCAGGTGG TGCGGCTGCG AGACGTGGCA CGGGTGGATC TGAGCCAGCA GAACTTCAGC
AATTACGCCC GGTTCACCGG CCACAAATCA GCCCAGATCG TGGTTTTCGC CCTTCCGGAC
GCCAACGCCA TCGATGTGGC CGACAGCGTT TACAAGGCCC TGGACGGGAT GAGCAAGAAA
TTCCCCGACG GGATGAAATA CGCCATCCGC TACGACACCA CCAAGTTTGT CAGGGAGGCG
ATCTCCAGCG TCTACGACAC ACTCTTCATA GCCGCATTCC TGGTGCTCTT CGTCATCCTC
CTGTTCCTGC AGAACATCAG GGCGATGCTG GTTCCGGCCA CCACTGTGCC GGTCACCATC
ATTGGCGCCT TTATCGCCAT GGCCGGACTC GGTTTCACGA TCAACCTGAT GACCCTGTTC
GCGCTGGTGC TGGTCATCGG GATCGTGGTG GACGACGCCA TCGTTATCGT GGAGAGCAGT
TCATACTATA TCGAAAAGGG GCTTGCCCCG AAGGAGGCCA CCATCAAGGC GATGCGGGAA
CTGACCGGGC CGGTGATGGG GATTACCCTT GCCCTGGTCG CGGTCTTCCT TCCGGCGGCC
TTCTTCCCGG GAATCACCGG GCAGATATTC CGCCAGTTCG CCCTGGTAAT CGCCTCAACG
GCCGTGATCA GCGCCATCAA CGCACTTACC CTGAAGCCGG TCCAGTGCGC CTTGTGGCTG
AGGCCGCGCG GGGAAAAGCG GCCTAACTGG TTCTACCGGG GATTCAACCG GGCGTTCCAG
TCCTTCACCA ATGTCTACAT TGGGATCGTC GCCCGGATGG TGAAACGGCC GGTCCTGTTC
GTTGTCATTT TCGCCATCAT CGTCACAACC TCTTTCCTGG TATTCATAAA TCGCCCCCTC
GGCTTTCTCC CCACCGAGGA CCAGGGTTAC GGCGTCCTGG TGTCCCGCAT CCCCGAAGGG
GCCTCACAGC CCAGGTCGGA GAAGGTGGCG GTGCAGATCA ACGAGATTCT CAAAAAGACC
TCCGGTGTCG ACTTCTGGGT CCACATCGGC GGGTTGTCGA TCCTGGATGG TGCCAACGTC
TCAAACATGT CCACCACCTT CGTCGTTTAC AAAGACTGGA GCGAGCGGGG CTCCGCCCTG
AACCAGGACA GGATCATAGC GAGCATCAAT CGCCAGCTTG CCGAGATCCA GGAGGCACAG
GCGTTTGTGG TCATCCCTCC GCCGATCCGG GGCCTCGGTC AGACTGGCGG TTTCCAGATG
ATGGTGGAGG ATCGGGGGAG CGTCGGTCTT GAACGGCTCA AGGATGCCGC TGACGAGCTG
ATGCGGAGCG GCAACTCACA GCCTAACCTG AAGGGCCTCG CCTCCACCTT CAGCCTAAGC
AGCCCCCAAT TGTACCTGGA TATCGACAGG ACCAAGGCGG AGGCCCTCCT GGTGCCCCTG
TCGAATGTCT TCGAGACCCT CCAGGCATAC CTCGGTTCCT CGTTCGTGAA CCTCTTCAAC
AAATACAACC AGGTCTTCCA GGTCTATATT CAGGCCGACA GCCCTTACCG CATCAGGCCC
GAGGACATAG GAAAACTCTA TGTGCGCAAC CAACGGGGGG AGATGGTTCC CCTCGGCGCC
CTGATTAATG TCAGGCAGAC CCAGGGCCCC GAACTGATAA CCCGGTACAA CCTCTACCCG
GCCGCCGCCA TTTTCGGCTC TGCCGCCCCC GGCTTCAGCT CCGGTCAGGC CCTGACTCTG
ATGGAGAGGA TGGCCGCCGA AAAGCTCCCT GAGGGGATTG ACTTCGATTG GACCTCCACC
AGCTTCCAGG AAAAGAAGGT GGGCAAACAA GCCTACTTCA TCTACGCCCT CTCCGTCATC
CTGGTCTACA TGGTCCTGGC GGCCCTGTAC GAAAGCTGGA CTTCGCCCGC AGCGATCATT
CTCGTGGTCC CGATAGCGCT GGTCGGAGTC CTTCTGGCCC TCATCATCCG GGGCTACGAC
AACAACCTCT ATACCCAGGT GGGGCTGGTG CTGATGATTG CACTGGCGAG CAAAAACGCC
ATCCTTATCG TGGAATTCGC CCGCGACCTC CACCACGGAG GGATGTCCAT AGCCGAGGCC
GCCATCGAGG CAACCCGCCG CCGGTTCCGT CCGATCGTCA TGACCTCGTT CGCGTTCATC
CTGGGAGTCG TTCCGCTTGT GGTCGCGTTC GGAGCGGGTT CGGCGGGCCA ACGTGCCATC
GGCTCTGTCG TCTTCGGGGG CATGATCTCC TCCACCCTTC TCGCCATCCC GTTCGTTCCG
GTGTTCTATG TGGTCCTGGA ACGTATGAGT GAATGGGTGG GCAATTGGCG TTCGAAGAGG
ACCCTGCGTC GATAA
|
|---|
| Protein sequence | MISQFFIERP IFANVIALVT VIIGLIFLNR LPVAQYPQIV PPTIQVTARY PGASAEVVAA
TIGVPIEQAV NGVEGSIYMS STSGSDGSYN LTITFDVGTD LNTSLALVQN LVNTSLAQLP
GGAQQQGVTV KKVSPNILLV ASLYADDERF EEIFLSNYAV INLQNPLARL PGVGQVRVFG
AGPYSMRVWL DAKRLQSFDL TTSDILTAIQ RQNVQVVAGQ LGAPPVPASQ SFQFTVTTLG
RLSDVGQFED IVVKTATGPA PQVVRLRDVA RVDLSQQNFS NYARFTGHKS AQIVVFALPD
ANAIDVADSV YKALDGMSKK FPDGMKYAIR YDTTKFVREA ISSVYDTLFI AAFLVLFVIL
LFLQNIRAML VPATTVPVTI IGAFIAMAGL GFTINLMTLF ALVLVIGIVV DDAIVIVESS
SYYIEKGLAP KEATIKAMRE LTGPVMGITL ALVAVFLPAA FFPGITGQIF RQFALVIAST
AVISAINALT LKPVQCALWL RPRGEKRPNW FYRGFNRAFQ SFTNVYIGIV ARMVKRPVLF
VVIFAIIVTT SFLVFINRPL GFLPTEDQGY GVLVSRIPEG ASQPRSEKVA VQINEILKKT
SGVDFWVHIG GLSILDGANV SNMSTTFVVY KDWSERGSAL NQDRIIASIN RQLAEIQEAQ
AFVVIPPPIR GLGQTGGFQM MVEDRGSVGL ERLKDAADEL MRSGNSQPNL KGLASTFSLS
SPQLYLDIDR TKAEALLVPL SNVFETLQAY LGSSFVNLFN KYNQVFQVYI QADSPYRIRP
EDIGKLYVRN QRGEMVPLGA LINVRQTQGP ELITRYNLYP AAAIFGSAAP GFSSGQALTL
MERMAAEKLP EGIDFDWTST SFQEKKVGKQ AYFIYALSVI LVYMVLAALY ESWTSPAAII
LVVPIALVGV LLALIIRGYD NNLYTQVGLV LMIALASKNA ILIVEFARDL HHGGMSIAEA
AIEATRRRFR PIVMTSFAFI LGVVPLVVAF GAGSAGQRAI GSVVFGGMIS STLLAIPFVP
VFYVVLERMS EWVGNWRSKR TLRR
|
|---|
| |