| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1478 |
|---|
| Symbol | |
|---|
| ID | 3740195 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1667368 |
|---|
| End bp | 1668951 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637778764 |
|---|
| Product | GH3 auxin-responsive promoter |
|---|
| Protein accession | YP_384437 |
|---|
| Protein GI | 78222690 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 58 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 0.173313 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGCAT CTTCCCCCTT CAGGGCACTG ACGGCGCCGG CCCTGGATCT GATGCTGAAA
AGCGGCGCCT CAGCCCTTGC CAGGAACTTC GAGTCCCGCG ACTCCGTGGC CTGCCAGCGG
GAGATGCTGC AGCGCCTGGT GGCGGTCGGA GGGGGCACCA GATTCGGCCG TGATCACGGA
CTGGCGGAAT TGGCGGGAGA GCCCATCGAC CGGCTTTACG CTCAATACCG CCGACGGGTC
CCGATCCGTA CCTACTCTGA CTTCTGGAAC GAGTACTTTC AGGAGGGGCT TCGGGAGGAG
AATGGCAGGA AGCGGCTTCT TCTGGAAGAT GCCACCTGGC CGGGCAAGAT CCCCTTTTTC
TGCGAAACCT CGGGCACCAC TGCCCCCACC AAGTACATTC CATTCTCACG GGAGATGTTC
GCCGCCAACA AGCGGGCCGC CCTGGACATG ACCGCCTGCT ACCTCCACCG CAACCCCAGG
AGCCGTCTCT TCCAGGGAAA GCTCCTCTAT ATGTCCGGAA ACACGAATCT CACGGATCTG
GGGGATGGGG TCAAAAGCGG CGACATGAGC GCCATCACCC TGCGTCATCG CCCCTTCTTC
CTTAAACCCT TCGTTGCGCC GGGAATACGG GTGGCAGCCC TGCCGTGGGA AGAAAAGGTG
GTGGAGTTGG CGGGGATGCT CCTCTCGGAC CGCTCCATCC GGGGGATCTC CGGCGTTCCC
CCCTGGATCA TCCTGCTGCT GCAGCGGGTG GAGGAGATGG GGCACCGCTC CCTCTCGGAG
CTTCTGCCCA ATCTCGAACT CATCATCCAC GGCGGCACCA GCATGAAACC CTACCGCCGG
GAATTCGACA TTCTCTTCCG CAACCGACTT CCCAACTATC TGGAGGTACT CCCTTCATCG
GAAGCGTTCA TGGCCTTTCA GCTCCTGGGG GAGGAGCGGA TGCGCCTTGC CCCCCACTAC
GGGGTATTCT TCGAGTTTGT CCCCTTCGAG GAACTTGACG AGCGGGGAGT GCCAGCCCCC
GACGCCCCGG CGATTCCCCT GGAGGAGATC GAGACCGGGC GGCGCTACGC CGTCATCCTT
ACCACCTGCT CCGGGCTCTG GCGCTATCAT ATCGGCGACA CCATCCGCTT CACCGACCGG
GAGCCCCTCT TTATCGAATT CACGGGCAGG GACAAGTTTC TGGACCGCTT CGAGGAAAAG
GTAACCCAAG GAGAAGTGGA GGAGGCGGTG GCCCGGCTTA ACCAGACGGG TGGCATAGAG
GTGCGGGAAT TCATGGTGGG CCCTGACATC GCAAGCCGGC GACACGTGTG GGTGCTGGCG
GTTGGAGAGA TGAACGAGCG TGATAGCGGA ACCCTGGAGC GTCTTCTGGA CGCAACCCTT
CGATCCCTGA ACGCCGACTA CGCCACGTTC CGGGAACAGG GACGAATTGC GCCACCGCGG
GTTGTGACGG TGGAAGAGGA ACTCATCTAC CGCTGGTCAC GGGAGGTGCG GGGAAAGCTC
GGTGGCCAGA GTAAAATCCC CCACATCGAT CCGACGGTTG ACGGAGAGAT GATTATGAGC
CTGACGGAAT TCGCCGGCCA TTGA
|
|---|
| Protein sequence | MTASSPFRAL TAPALDLMLK SGASALARNF ESRDSVACQR EMLQRLVAVG GGTRFGRDHG
LAELAGEPID RLYAQYRRRV PIRTYSDFWN EYFQEGLREE NGRKRLLLED ATWPGKIPFF
CETSGTTAPT KYIPFSREMF AANKRAALDM TACYLHRNPR SRLFQGKLLY MSGNTNLTDL
GDGVKSGDMS AITLRHRPFF LKPFVAPGIR VAALPWEEKV VELAGMLLSD RSIRGISGVP
PWIILLLQRV EEMGHRSLSE LLPNLELIIH GGTSMKPYRR EFDILFRNRL PNYLEVLPSS
EAFMAFQLLG EERMRLAPHY GVFFEFVPFE ELDERGVPAP DAPAIPLEEI ETGRRYAVIL
TTCSGLWRYH IGDTIRFTDR EPLFIEFTGR DKFLDRFEEK VTQGEVEEAV ARLNQTGGIE
VREFMVGPDI ASRRHVWVLA VGEMNERDSG TLERLLDATL RSLNADYATF REQGRIAPPR
VVTVEEELIY RWSREVRGKL GGQSKIPHID PTVDGEMIMS LTEFAGH
|
|---|
| |