| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1268 |
|---|
| Symbol | |
|---|
| ID | 3739767 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1428796 |
|---|
| End bp | 1430079 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637778548 |
|---|
| Product | 3-isopropylmalate dehydratase large subunit |
|---|
| Protein accession | YP_384229 |
|---|
| Protein GI | 78222482 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
|---|
| TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit
[TIGR01343] homoaconitate hydratase family protein
[TIGR02086] 3-isopropylmalate dehydratase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0000132862 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0000000000181918 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGGAAGA CTACAGCGGA AAAAATTTTT GCAAGCCACC TGGTCGATGA GCCGTTTTCC
GGCACCAAGG TGCTCCGGCT CGACGTGGTG ATGTGCCACG AAATTACCAC TCCCATAGCC
ATTGCCGACC TGATGGCGCG AGGTAAAGAC CGGGTTTTTG ACCCCACGAA GATCAAGGCG
GTGATTGATC ACGTCACGCC GAGCAAGGAC TCGAAGACCG CCACCCAGGC GAAAATGTTG
CGCGACTGGG CACGGCGACA CGCCATCAAG GACTTCTTCG ATGTGGGGCA TAACGGCGTG
TGTCACGCAC TCTTCCCCGA GAAGGGGTAC ATCCGCCCCG GTTACACAGT CATCATGGGC
GATTCCCATA CCTGCACCCA TGGCGCCTTC GGTGCCTTTG CCGCCGGTGT CGGCACTACC
GACCTGGAGG TCGGTATTCT CAAAGGGGTC TGCGCTTTCC GTGAGCCCAA GAGCATCCGG
ATCAACCTGA ACGGCACCCT TCCCAAGGGC GTTTATGCAA AGGATGTCAT CCTCTACGTC
ATCGGCCAGC TCGGCGTCAA CGGCGCTACT GACCGGGTCA TGGAGTTCCG GGGACCGGTG
GTGGACGCCA TGACCATGGA GTCGCGGATG ACACTTTGCA ACATGGCCAT CGAGGCGGGA
GGCACCTCCG GCATCTGCAT GCCCGACATG GTGACGGTGG AATACCTCTG GCCCTTCATT
GAGAACGAGT ACCCGTCCAA AGAGGCTGCC CTCGCCGAGT TCAGCACATG GCGCTCCGAC
GACGACGCTG TCTACGAGCG GGTGCTCGAC TTTGACGTTT CTGTCCTCGA GCCGATCGTC
ACCTTCGGCT ACAAGCCCGA TCAGGTGAAG CCGATCAGCG AAATTGCCGG TTCTCCTGTT
GATCAAGTCT ATCTGGGCTC CTGCACTAAC GGCCGCCTTG AAGATCTGCG GATTGCTGCC
CGGATTCTCA AAGGGAAAAA GATTGCCCCG TCGGTGCGAG GGATTCTCTC CCCGGCCACG
CCGAAGATTT ACAAGGACGC CATGGCCGAG GGGCTTATCG ACATTTTCAT GGAGGCGGGT
TTCTGCGTCA CGAATCCCAC CTGCGGTGCC TGCCTTGGCA TGAGCAACGG CGTCTTGGCT
GAAGGGGAGG TCTGTGCATC CACCACGAAC CGCAACTTCA TGGGGCGGAT GGGGAAGGGG
GGGATGGTCC ACCTCATGTC CCCGGCCACG AGCGCAGCAA CGGCCATCGA AGGGGTGATC
GCCGATCCCC GGAAGTACCT GTAA
|
|---|
| Protein sequence | MGKTTAEKIF ASHLVDEPFS GTKVLRLDVV MCHEITTPIA IADLMARGKD RVFDPTKIKA
VIDHVTPSKD SKTATQAKML RDWARRHAIK DFFDVGHNGV CHALFPEKGY IRPGYTVIMG
DSHTCTHGAF GAFAAGVGTT DLEVGILKGV CAFREPKSIR INLNGTLPKG VYAKDVILYV
IGQLGVNGAT DRVMEFRGPV VDAMTMESRM TLCNMAIEAG GTSGICMPDM VTVEYLWPFI
ENEYPSKEAA LAEFSTWRSD DDAVYERVLD FDVSVLEPIV TFGYKPDQVK PISEIAGSPV
DQVYLGSCTN GRLEDLRIAA RILKGKKIAP SVRGILSPAT PKIYKDAMAE GLIDIFMEAG
FCVTNPTCGA CLGMSNGVLA EGEVCASTTN RNFMGRMGKG GMVHLMSPAT SAATAIEGVI
ADPRKYL
|
|---|
| |